Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Use1Q9CQ56 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Use1Q9CQ56 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Use1Q9CQ56 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Use1Q9CQ56 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Use1Q9CQ56 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.34■□□□□ 0.21
Use1Q9CQ56 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Use1Q9CQ56 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC16.33■□□□□ 0.21
Use1Q9CQ56 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Use1Q9CQ56 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Use1Q9CQ56 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Use1Q9CQ56 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Use1Q9CQ56 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Gm29241-201ENSMUST00000189260 1096 ntBASIC16.32■□□□□ 0.2
Use1Q9CQ56 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.32■□□□□ 0.2
Use1Q9CQ56 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.32■□□□□ 0.2
Use1Q9CQ56 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 AC125311.2-201ENSMUST00000227477 1940 ntBASIC16.31■□□□□ 0.2
Use1Q9CQ56 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Use1Q9CQ56 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Gm5408-201ENSMUST00000197998 747 ntBASIC16.3■□□□□ 0.2
Use1Q9CQ56 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Use1Q9CQ56 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Use1Q9CQ56 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Use1Q9CQ56 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Use1Q9CQ56 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms