Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Gm21814-202ENSMUST00000203277 873 ntBASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Ushbp1Q8R370 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Gm18025-201ENSMUST00000221733 862 ntBASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ushbp1Q8R370 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ushbp1Q8R370 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Ushbp1Q8R370 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ushbp1Q8R370 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ushbp1Q8R370 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.33■□□□□ 0.69
Ushbp1Q8R370 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Ushbp1Q8R370 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ushbp1Q8R370 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.33■□□□□ 0.68
Ushbp1Q8R370 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ushbp1Q8R370 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ushbp1Q8R370 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Gm11539-201ENSMUST00000119837 557 ntBASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Gm13436-201ENSMUST00000120418 567 ntBASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Gm13559-201ENSMUST00000120476 863 ntBASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Gm42545-201ENSMUST00000202755 922 ntBASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Gm7367-201ENSMUST00000057611 492 ntBASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ushbp1Q8R370 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.3■□□□□ 0.68
Ushbp1Q8R370 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.3■□□□□ 0.68
Ushbp1Q8R370 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms