Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Mir1199-201ENSMUST00000117015 119 ntBASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trub1Q8C0D0 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trub1Q8C0D0 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trub1Q8C0D0 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trub1Q8C0D0 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
Trub1Q8C0D0 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Trub1Q8C0D0 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trub1Q8C0D0 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trub1Q8C0D0 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Trub1Q8C0D0 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Gm12085-201ENSMUST00000119263 940 ntBASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trub1Q8C0D0 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Gm22240-201ENSMUST00000175225 82 ntBASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trub1Q8C0D0 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 398.6 ms