Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC23.7■■□□□ 1.38
Usp40Q8BWR4 AC130713.1-201ENSMUST00000228853 1096 ntBASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Usp40Q8BWR4 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Gm6623-201ENSMUST00000173570 544 ntBASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Usp40Q8BWR4 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Gm5112-201ENSMUST00000204407 2368 ntBASIC23.68■■□□□ 1.38
Usp40Q8BWR4 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Usp40Q8BWR4 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Usp40Q8BWR4 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Gm28033-201ENSMUST00000184224 96 ntBASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Usp40Q8BWR4 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Usp40Q8BWR4 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC23.65■■□□□ 1.38
Usp40Q8BWR4 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC23.65■■□□□ 1.38
Usp40Q8BWR4 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC23.65■■□□□ 1.38
Usp40Q8BWR4 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC23.65■■□□□ 1.38
Usp40Q8BWR4 Gm17807-201ENSMUST00000186869 298 ntBASIC23.65■■□□□ 1.38
Usp40Q8BWR4 AC159205.3-201ENSMUST00000224614 874 ntBASIC23.65■■□□□ 1.38
Usp40Q8BWR4 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Usp40Q8BWR4 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Usp40Q8BWR4 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Usp40Q8BWR4 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC23.64■■□□□ 1.38
Usp40Q8BWR4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
Usp40Q8BWR4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC23.64■■□□□ 1.38
Usp40Q8BWR4 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Fam105a-203ENSMUST00000226170 3043 ntBASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
Usp40Q8BWR4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Usp40Q8BWR4 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Gm17971-201ENSMUST00000190239 806 ntBASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms