Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Gm13401-201ENSMUST00000117074 291 ntBASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Gm3375-201ENSMUST00000203929 796 ntBASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smarca1Q6PGB8 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Gm10517-202ENSMUST00000192970 758 ntBASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.18■□□□□ 0.66
Smarca1Q6PGB8 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Gm30025-201ENSMUST00000218555 728 ntBASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Smarca1Q6PGB8 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smarca1Q6PGB8 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Gm6433-201ENSMUST00000118634 875 ntBASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Gm4974-201ENSMUST00000209974 875 ntBASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms