Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Gm10819-201ENSMUST00000099988 561 ntBASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Hmgb4Q6P8W9 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Mir5130-201ENSMUST00000175160 84 ntBASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Hmgb4Q6P8W9 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Gm2274-201ENSMUST00000184539 609 ntBASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Gm45058-201ENSMUST00000205810 766 ntBASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb4Q6P8W9 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Gm23634-201ENSMUST00000175071 91 ntBASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb4Q6P8W9 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb4Q6P8W9 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms