Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Mir5122-201ENSMUST00000175004 89 ntBASIC21.19■□□□□ 0.98
Trim27Q62158 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.19■□□□□ 0.98
Trim27Q62158 Gm3375-201ENSMUST00000203929 796 ntBASIC21.19■□□□□ 0.98
Trim27Q62158 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
Trim27Q62158 Timm23-208ENSMUST00000226683 750 ntBASIC21.19■□□□□ 0.98
Trim27Q62158 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim27Q62158 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Trim27Q62158 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim27Q62158 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim27Q62158 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim27Q62158 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Trim27Q62158 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC21.18■□□□□ 0.98
Trim27Q62158 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Gm21814-202ENSMUST00000203277 873 ntBASIC21.18■□□□□ 0.98
Trim27Q62158 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Trim27Q62158 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim27Q62158 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Trim27Q62158 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 AC156016.1-201ENSMUST00000227190 1035 ntBASIC21.17■□□□□ 0.98
Trim27Q62158 Odf3b-204ENSMUST00000227834 930 ntBASIC21.17■□□□□ 0.98
Trim27Q62158 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Trim27Q62158 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC21.17■□□□□ 0.98
Trim27Q62158 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Gm11620-201ENSMUST00000118770 1845 ntBASIC21.17■□□□□ 0.98
Trim27Q62158 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
Trim27Q62158 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC21.17■□□□□ 0.98
Trim27Q62158 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim27Q62158 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC21.17■□□□□ 0.98
Trim27Q62158 Gm7292-201ENSMUST00000194706 2527 ntBASIC21.16■□□□□ 0.98
Trim27Q62158 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Trim27Q62158 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim27Q62158 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC21.16■□□□□ 0.98
Trim27Q62158 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim27Q62158 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim27Q62158 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim27Q62158 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21.16■□□□□ 0.98
Trim27Q62158 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.16■□□□□ 0.98
Trim27Q62158 Gm9731-201ENSMUST00000209480 747 ntBASIC21.16■□□□□ 0.98
Trim27Q62158 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC21.16■□□□□ 0.98
Trim27Q62158 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim27Q62158 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim27Q62158 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Trim27Q62158 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim27Q62158 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Arhgef4-208ENSMUST00000211073 171 ntBASIC21.15■□□□□ 0.98
Trim27Q62158 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Trim27Q62158 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim27Q62158 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Trim27Q62158 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim27Q62158 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim27Q62158 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim27Q62158 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC21.14■□□□□ 0.97
Trim27Q62158 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC21.14■□□□□ 0.97
Trim27Q62158 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Arhgef33-211ENSMUST00000225658 473 ntBASIC21.14■□□□□ 0.97
Trim27Q62158 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim27Q62158 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Trim27Q62158 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim27Q62158 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Trim27Q62158 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Trim27Q62158 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim27Q62158 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC21.13■□□□□ 0.97
Trim27Q62158 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms