Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc88aQ5SNZ0 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc88aQ5SNZ0 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Ccdc88aQ5SNZ0 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Ccdc88aQ5SNZ0 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc88aQ5SNZ0 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc88aQ5SNZ0 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Ccdc88aQ5SNZ0 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC19.82■□□□□ 0.76
Ccdc88aQ5SNZ0 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm21559-201ENSMUST00000220638 855 ntBASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm8587-201ENSMUST00000076538 843 ntBASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc88aQ5SNZ0 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc88aQ5SNZ0 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.79■□□□□ 0.76
Ccdc88aQ5SNZ0 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc88aQ5SNZ0 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.77■□□□□ 0.76
Ccdc88aQ5SNZ0 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms