Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rnf40Q3U319 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.91■□□□□ 0.46
Rnf40Q3U319 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rnf40Q3U319 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Smad6-203ENSMUST00000179458 273 ntBASIC17.9■□□□□ 0.46
Rnf40Q3U319 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rnf40Q3U319 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
Rnf40Q3U319 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Rnf40Q3U319 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Rnf40Q3U319 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Gm22325-201ENSMUST00000158904 308 ntBASIC17.88■□□□□ 0.45
Rnf40Q3U319 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.88■□□□□ 0.45
Rnf40Q3U319 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rnf40Q3U319 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms