Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Gm37856-201ENSMUST00000191634 999 ntBASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col28a1Q2UY11 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.27
Col28a1Q2UY11 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col28a1Q2UY11 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col28a1Q2UY11 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Col28a1Q2UY11 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
Col28a1Q2UY11 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col28a1Q2UY11 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col28a1Q2UY11 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Gm10812-201ENSMUST00000099864 546 ntBASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col28a1Q2UY11 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col28a1Q2UY11 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.74■□□□□ 0.27
Col28a1Q2UY11 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col28a1Q2UY11 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms