Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Nkx3-1P97436 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Fst-202ENSMUST00000223640 2612 ntBASIC14.9□□□□□ -0.02
Nkx3-1P97436 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC14.9□□□□□ -0.02
Nkx3-1P97436 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Nkx3-1P97436 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC14.89□□□□□ -0.03
Nkx3-1P97436 Gm29518-201ENSMUST00000190858 372 ntBASIC14.89□□□□□ -0.03
Nkx3-1P97436 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC14.89□□□□□ -0.03
Nkx3-1P97436 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 AC159205.3-201ENSMUST00000224614 874 ntBASIC14.89□□□□□ -0.03
Nkx3-1P97436 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC14.89□□□□□ -0.03
Nkx3-1P97436 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC14.88□□□□□ -0.03
Nkx3-1P97436 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Nkx3-1P97436 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Nkx3-1P97436 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Gm11355-201ENSMUST00000121120 306 ntBASIC14.87□□□□□ -0.03
Nkx3-1P97436 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 78.8 ms