Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.77■□□□□ 0.6
Lig3P97386 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Lig3P97386 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.76■□□□□ 0.59
Lig3P97386 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Lig3P97386 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Gm15375-201ENSMUST00000119510 849 ntBASIC18.76■□□□□ 0.59
Lig3P97386 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.76■□□□□ 0.59
Lig3P97386 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Zfp783-201ENSMUST00000095946 670 ntBASIC18.76■□□□□ 0.59
Lig3P97386 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.76■□□□□ 0.59
Lig3P97386 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Lig3P97386 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lig3P97386 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.75■□□□□ 0.59
Lig3P97386 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC18.75■□□□□ 0.59
Lig3P97386 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Gm12382-201ENSMUST00000122005 922 ntBASIC18.75■□□□□ 0.59
Lig3P97386 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.75■□□□□ 0.59
Lig3P97386 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.75■□□□□ 0.59
Lig3P97386 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
Lig3P97386 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Lig3P97386 Gm18032-201ENSMUST00000222541 538 ntBASIC18.75■□□□□ 0.59
Lig3P97386 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.75■□□□□ 0.59
Lig3P97386 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lig3P97386 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Lig3P97386 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.74■□□□□ 0.59
Lig3P97386 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Gm14859-201ENSMUST00000117752 357 ntBASIC18.74■□□□□ 0.59
Lig3P97386 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Ank2-226ENSMUST00000189368 339 ntBASIC18.74■□□□□ 0.59
Lig3P97386 Gm37292-201ENSMUST00000192062 758 ntBASIC18.74■□□□□ 0.59
Lig3P97386 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.74■□□□□ 0.59
Lig3P97386 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Lig3P97386 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.74■□□□□ 0.59
Lig3P97386 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Lig3P97386 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.74■□□□□ 0.59
Lig3P97386 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lig3P97386 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.73■□□□□ 0.59
Lig3P97386 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.73■□□□□ 0.59
Lig3P97386 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.73■□□□□ 0.59
Lig3P97386 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lig3P97386 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms