Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Cux1P53564 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC26.57■■□□□ 1.84
Cux1P53564 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Cux1P53564 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
Cux1P53564 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC26.57■■□□□ 1.84
Cux1P53564 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Cux1P53564 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC26.57■■□□□ 1.84
Cux1P53564 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC26.57■■□□□ 1.84
Cux1P53564 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC26.57■■□□□ 1.84
Cux1P53564 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Cux1P53564 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC26.56■■□□□ 1.84
Cux1P53564 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cux1P53564 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cux1P53564 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cux1P53564 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC26.56■■□□□ 1.84
Cux1P53564 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Cux1P53564 Grk6-206ENSMUST00000224995 2971 ntBASIC26.55■■□□□ 1.84
Cux1P53564 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cux1P53564 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cux1P53564 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cux1P53564 Gm28659-201ENSMUST00000188013 759 ntBASIC26.55■■□□□ 1.84
Cux1P53564 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cux1P53564 Gm5828-201ENSMUST00000071842 1860 ntBASIC26.55■■□□□ 1.84
Cux1P53564 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Cux1P53564 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cux1P53564 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cux1P53564 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC26.55■■□□□ 1.84
Cux1P53564 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC26.55■■□□□ 1.84
Cux1P53564 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC26.55■■□□□ 1.84
Cux1P53564 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cux1P53564 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC26.55■■□□□ 1.84
Cux1P53564 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cux1P53564 Gm43347-201ENSMUST00000200226 580 ntBASIC26.54■■□□□ 1.84
Cux1P53564 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC26.53■■□□□ 1.84
Cux1P53564 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cux1P53564 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cux1P53564 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cux1P53564 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cux1P53564 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cux1P53564 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cux1P53564 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
Cux1P53564 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC26.52■■□□□ 1.84
Cux1P53564 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC26.52■■□□□ 1.84
Cux1P53564 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC26.52■■□□□ 1.84
Cux1P53564 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cux1P53564 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC26.52■■□□□ 1.84
Cux1P53564 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cux1P53564 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC26.51■■□□□ 1.83
Cux1P53564 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
Cux1P53564 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cux1P53564 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
Cux1P53564 Gm5864-201ENSMUST00000202263 970 ntBASIC26.51■■□□□ 1.83
Cux1P53564 Gm18421-201ENSMUST00000204122 625 ntBASIC26.51■■□□□ 1.83
Cux1P53564 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC26.51■■□□□ 1.83
Cux1P53564 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC26.51■■□□□ 1.83
Cux1P53564 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Cux1P53564 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cux1P53564 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cux1P53564 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Cux1P53564 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Cux1P53564 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Cux1P53564 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC26.5■■□□□ 1.83
Cux1P53564 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cux1P53564 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cux1P53564 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cux1P53564 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cux1P53564 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Cux1P53564 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Cux1P53564 AC159301.1-201ENSMUST00000225130 1182 ntBASIC26.49■■□□□ 1.83
Cux1P53564 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC26.49■■□□□ 1.83
Cux1P53564 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Cux1P53564 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
Cux1P53564 Gm15372-201ENSMUST00000120729 834 ntBASIC26.49■■□□□ 1.83
Cux1P53564 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC26.49■■□□□ 1.83
Cux1P53564 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Cux1P53564 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC26.48■■□□□ 1.83
Cux1P53564 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cux1P53564 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
Cux1P53564 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cux1P53564 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cux1P53564 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC26.48■■□□□ 1.83
Cux1P53564 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC26.48■■□□□ 1.83
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms