Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Reep4-203ENSMUST00000226563 1444 ntBASIC14.35□□□□□ -0.11
Nkx2-1P50220 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Gm42778-201ENSMUST00000199644 553 ntBASIC14.35□□□□□ -0.11
Nkx2-1P50220 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Nkx2-1P50220 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx2-1P50220 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx2-1P50220 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-1P50220 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-1P50220 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-1P50220 Gm26917-202ENSMUST00000192833 3329 ntBASIC14.33□□□□□ -0.11
Nkx2-1P50220 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-1P50220 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Nkx2-1P50220 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Nkx2-1P50220 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx2-1P50220 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Gm37166-201ENSMUST00000195473 2474 ntBASIC14.33□□□□□ -0.12
Nkx2-1P50220 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 AC099934.2-201ENSMUST00000196389 70 ntBASIC14.33□□□□□ -0.12
Nkx2-1P50220 AC156953.1-201ENSMUST00000196953 70 ntBASIC14.33□□□□□ -0.12
Nkx2-1P50220 AC157822.2-201ENSMUST00000200291 70 ntBASIC14.33□□□□□ -0.12
Nkx2-1P50220 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx2-1P50220 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 AC131586.2-201ENSMUST00000228370 1512 ntBASIC14.32□□□□□ -0.12
Nkx2-1P50220 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx2-1P50220 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms