Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Rfx1P48377 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rfx1P48377 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rfx1P48377 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rfx1P48377 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rfx1P48377 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rfx1P48377 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rfx1P48377 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Rfx1P48377 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rfx1P48377 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rfx1P48377 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Rfx1P48377 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rfx1P48377 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Rfx1P48377 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Rfx1P48377 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC20.64■□□□□ 0.89
Rfx1P48377 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC20.64■□□□□ 0.89
Rfx1P48377 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.64■□□□□ 0.89
Rfx1P48377 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Rfx1P48377 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rfx1P48377 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Rfx1P48377 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rfx1P48377 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Rfx1P48377 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rfx1P48377 Gm43272-201ENSMUST00000200599 1584 ntBASIC20.63■□□□□ 0.89
Rfx1P48377 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Gm11841-201ENSMUST00000117060 1963 ntBASIC20.63■□□□□ 0.89
Rfx1P48377 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.63■□□□□ 0.89
Rfx1P48377 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
Rfx1P48377 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Rfx1P48377 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC20.63■□□□□ 0.89
Rfx1P48377 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx1P48377 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Rfx1P48377 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Gm2399-201ENSMUST00000104944 225 ntBASIC20.62■□□□□ 0.89
Rfx1P48377 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.62■□□□□ 0.89
Rfx1P48377 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.62■□□□□ 0.89
Rfx1P48377 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.62■□□□□ 0.89
Rfx1P48377 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Zfp783-201ENSMUST00000095946 670 ntBASIC20.62■□□□□ 0.89
Rfx1P48377 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.62■□□□□ 0.89
Rfx1P48377 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Rfx1P48377 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC20.62■□□□□ 0.89
Rfx1P48377 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx1P48377 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Rfx1P48377 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Rfx1P48377 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Rfx1P48377 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Rfx1P48377 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.61■□□□□ 0.89
Rfx1P48377 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.61■□□□□ 0.89
Rfx1P48377 AV356131-201ENSMUST00000206201 750 ntBASIC20.61■□□□□ 0.89
Rfx1P48377 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Rfx1P48377 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx1P48377 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Rfx1P48377 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx1P48377 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
Rfx1P48377 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx1P48377 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx1P48377 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
Rfx1P48377 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx1P48377 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx1P48377 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx1P48377 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx1P48377 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rfx1P48377 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Rfx1P48377 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rfx1P48377 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC20.59■□□□□ 0.89
Rfx1P48377 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms