Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm14859-201ENSMUST00000117752 357 ntBASIC16.36■□□□□ 0.21
Msx1P13297 Gm27463-201ENSMUST00000183569 57 ntBASIC16.36■□□□□ 0.21
Msx1P13297 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Msx1P13297 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Msx1P13297 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Msx1P13297 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Gm10418-201ENSMUST00000100943 576 ntBASIC16.35■□□□□ 0.21
Msx1P13297 Gm9103-201ENSMUST00000119371 405 ntBASIC16.35■□□□□ 0.21
Msx1P13297 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.35■□□□□ 0.21
Msx1P13297 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.35■□□□□ 0.21
Msx1P13297 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC16.35■□□□□ 0.21
Msx1P13297 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.35■□□□□ 0.21
Msx1P13297 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Msx1P13297 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Msx1P13297 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC16.34■□□□□ 0.21
Msx1P13297 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.34■□□□□ 0.21
Msx1P13297 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC16.34■□□□□ 0.21
Msx1P13297 Mir2861-201ENSMUST00000175539 82 ntBASIC16.34■□□□□ 0.21
Msx1P13297 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.34■□□□□ 0.21
Msx1P13297 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Msx1P13297 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Msx1P13297 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msx1P13297 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Msx1P13297 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Msx1P13297 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Msx1P13297 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Msx1P13297 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.33■□□□□ 0.2
Msx1P13297 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 Gm29791-202ENSMUST00000207888 369 ntBASIC16.33■□□□□ 0.2
Msx1P13297 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Msx1P13297 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msx1P13297 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16.32■□□□□ 0.2
Msx1P13297 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Msx1P13297 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC16.32■□□□□ 0.2
Msx1P13297 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC16.32■□□□□ 0.2
Msx1P13297 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Gm45606-201ENSMUST00000209836 2795 ntBASIC16.32■□□□□ 0.2
Msx1P13297 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.32■□□□□ 0.2
Msx1P13297 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Msx1P13297 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
Msx1P13297 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msx1P13297 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Msx1P13297 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
Msx1P13297 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC16.31■□□□□ 0.2
Msx1P13297 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Gm37811-201ENSMUST00000192416 2601 ntBASIC16.31■□□□□ 0.2
Msx1P13297 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Gm14464-201ENSMUST00000119658 1254 ntBASIC16.31■□□□□ 0.2
Msx1P13297 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Mir5130-201ENSMUST00000175160 84 ntBASIC16.31■□□□□ 0.2
Msx1P13297 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Msx1P13297 Gm18101-201ENSMUST00000215769 548 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms