Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.81■□□□□ 0.28
ClppO88696 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ClppO88696 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 Gm10418-201ENSMUST00000100943 576 ntBASIC16.81■□□□□ 0.28
ClppO88696 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ClppO88696 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ClppO88696 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ClppO88696 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.81■□□□□ 0.28
ClppO88696 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ClppO88696 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ClppO88696 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ClppO88696 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.8■□□□□ 0.28
ClppO88696 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
ClppO88696 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.8■□□□□ 0.28
ClppO88696 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ClppO88696 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.79■□□□□ 0.28
ClppO88696 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ClppO88696 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ClppO88696 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16.78■□□□□ 0.28
ClppO88696 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 AC069562.2-201ENSMUST00000224644 2146 ntBASIC16.78■□□□□ 0.28
ClppO88696 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ClppO88696 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
ClppO88696 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.78■□□□□ 0.28
ClppO88696 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.78■□□□□ 0.28
ClppO88696 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC16.78■□□□□ 0.28
ClppO88696 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.78■□□□□ 0.28
ClppO88696 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ClppO88696 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.78■□□□□ 0.28
ClppO88696 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ClppO88696 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ClppO88696 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ClppO88696 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ClppO88696 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ClppO88696 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ClppO88696 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
ClppO88696 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ClppO88696 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ClppO88696 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ClppO88696 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.77■□□□□ 0.28
ClppO88696 Gm11539-201ENSMUST00000119837 557 ntBASIC16.77■□□□□ 0.28
ClppO88696 Gm13436-201ENSMUST00000120418 567 ntBASIC16.77■□□□□ 0.28
ClppO88696 Gm27463-201ENSMUST00000183569 57 ntBASIC16.77■□□□□ 0.28
ClppO88696 Otx2os1-204ENSMUST00000227221 751 ntBASIC16.77■□□□□ 0.28
ClppO88696 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
ClppO88696 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ClppO88696 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ClppO88696 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ClppO88696 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ClppO88696 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ClppO88696 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ClppO88696 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms