Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm14975-201ENSMUST00000118741 664 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm14413-201ENSMUST00000122158 408 ntBASIC3.88□□□□□ -1.79
ShhQ62226 1700119I11Rik-201ENSMUST00000122270 336 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Gm25784-201ENSMUST00000122524 81 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm23206-201ENSMUST00000122720 184 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm16024-201ENSMUST00000128841 171 ntTSL 3 BASIC3.88□□□□□ -1.79
ShhQ62226 AI847159-202ENSMUST00000138431 952 ntTSL 2 BASIC3.88□□□□□ -1.79
ShhQ62226 Gm23960-201ENSMUST00000157206 131 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm24537-201ENSMUST00000157950 102 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm17155-201ENSMUST00000165969 473 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Arpp19-211ENSMUST00000170310 899 ntTSL 3 BASIC3.88□□□□□ -1.79
ShhQ62226 Gm11168-201ENSMUST00000177722 684 ntAPPRIS P5 TSL 5 BASIC3.88□□□□□ -1.79
ShhQ62226 Gm11168-202ENSMUST00000178077 684 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
ShhQ62226 Gm24520-201ENSMUST00000179510 110 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Mir6345-201ENSMUST00000184286 128 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm8392-201ENSMUST00000185647 835 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm29428-201ENSMUST00000190086 409 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm28500-201ENSMUST00000190286 151 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm43525-201ENSMUST00000196460 616 ntTSL 2 BASIC3.88□□□□□ -1.79
ShhQ62226 Gm43407-201ENSMUST00000199816 317 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm7468-201ENSMUST00000203900 652 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm44371-201ENSMUST00000204148 467 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Olfr580-ps1-201ENSMUST00000210528 943 ntBASIC3.88□□□□□ -1.79
ShhQ62226 AC158686.2-201ENSMUST00000218599 976 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Gm7198-201ENSMUST00000219635 1074 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm7753-201ENSMUST00000221007 867 ntBASIC3.88□□□□□ -1.79
ShhQ62226 AC164117.2-201ENSMUST00000222090 327 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm46401-202ENSMUST00000223425 803 ntTSL 5 BASIC3.88□□□□□ -1.79
ShhQ62226 CT009754.1-201ENSMUST00000223489 558 ntTSL 3 BASIC3.88□□□□□ -1.79
ShhQ62226 CT009713.4-201ENSMUST00000224246 272 ntBASIC3.88□□□□□ -1.79
ShhQ62226 AC192333.2-201ENSMUST00000224771 196 ntBASIC3.88□□□□□ -1.79
ShhQ62226 AC115878.1-201ENSMUST00000227247 334 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Reg3g-201ENSMUST00000032089 771 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Olfr513-201ENSMUST00000055146 930 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ShhQ62226 Tgif2lx2-201ENSMUST00000072518 1030 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ShhQ62226 Olfr924-201ENSMUST00000072977 927 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ShhQ62226 Tgif2lx1-201ENSMUST00000073857 1030 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ShhQ62226 Mup5-201ENSMUST00000082287 925 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Gm25859-201ENSMUST00000083710 91 ntBASIC3.88□□□□□ -1.79
ShhQ62226 n-R5s151-201ENSMUST00000083959 119 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Xrn1-202ENSMUST00000185633 10256 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Nap1l1-202ENSMUST00000171797 3926 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Nap1l1-204ENSMUST00000218828 3934 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Gm15226-201ENSMUST00000156526 2971 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Kcnj1-201ENSMUST00000047334 2987 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Gm28634-201ENSMUST00000191087 2613 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Zfp850-203ENSMUST00000180502 6163 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
ShhQ62226 Cngb3-201ENSMUST00000102999 4708 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
ShhQ62226 Elavl4-206ENSMUST00000106601 3775 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm26869-201ENSMUST00000181241 3523 ntTSL 2 BASIC3.87□□□□□ -1.79
ShhQ62226 Cysltr1-202ENSMUST00000113480 5142 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
ShhQ62226 Olfr1466-202ENSMUST00000207124 1981 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
ShhQ62226 Frmpd3-201ENSMUST00000044702 3141 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
ShhQ62226 Vmn1r18-202ENSMUST00000228574 14315 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
ShhQ62226 Olfr575-202ENSMUST00000213477 3512 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm23271-201ENSMUST00000104052 124 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm25560-201ENSMUST00000104606 176 ntBASIC3.87□□□□□ -1.79
ShhQ62226 4933413L06Rik-202ENSMUST00000111588 922 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
ShhQ62226 Gm15148-201ENSMUST00000117602 156 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm14918-201ENSMUST00000118153 268 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm13454-201ENSMUST00000118166 483 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm12878-201ENSMUST00000118744 332 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm14649-201ENSMUST00000121814 324 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Platr32-201ENSMUST00000148597 394 ntTSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm10357-201ENSMUST00000159886 264 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Cfap61-214ENSMUST00000167179 183 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm10719-203ENSMUST00000179272 675 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm9892-201ENSMUST00000182415 992 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm19427-201ENSMUST00000183619 208 ntBASIC3.87□□□□□ -1.79
ShhQ62226 1700022E09Rik-201ENSMUST00000185295 299 ntTSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm28283-201ENSMUST00000185509 178 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm28267-201ENSMUST00000191093 265 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm37869-201ENSMUST00000193385 595 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Smr2-203ENSMUST00000196477 676 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
ShhQ62226 Gm31831-202ENSMUST00000198581 278 ntTSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm45590-201ENSMUST00000209715 262 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm45796-201ENSMUST00000212483 114 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm35548-201ENSMUST00000214348 441 ntTSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 AC160865.1-201ENSMUST00000219873 151 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm34662-201ENSMUST00000220502 215 ntTSL 3 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm18116-201ENSMUST00000220920 537 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Olfr906-201ENSMUST00000045493 936 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm7099-201ENSMUST00000080066 554 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Zfp972-201ENSMUST00000081529 472 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Mir19a-201ENSMUST00000083482 82 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Smr2-201ENSMUST00000087043 676 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
ShhQ62226 Gm38269-201ENSMUST00000194549 3298 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Rmi1-202ENSMUST00000224479 4212 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
ShhQ62226 Ccdc152-202ENSMUST00000226261 1327 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
ShhQ62226 Olfr205-202ENSMUST00000213910 1650 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
ShhQ62226 Gm10647-201ENSMUST00000098612 2036 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
ShhQ62226 AC140397.1-201ENSMUST00000225563 4562 ntBASIC3.87□□□□□ -1.79
ShhQ62226 Gm15356-201ENSMUST00000140669 2741 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 AC153964.1-201ENSMUST00000219677 3142 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Obox1-201ENSMUST00000067288 1512 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 0610010F05Rik-202ENSMUST00000093267 3646 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm44078-201ENSMUST00000204652 2646 ntBASIC3.86□□□□□ -1.79
ShhQ62226 AC125532.1-201ENSMUST00000216210 2334 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Rbm31y-201ENSMUST00000179408 1955 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm21379-201ENSMUST00000179772 1955 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 76,532 protein–RNA pairs in 91.6 ms