Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm44817-201ENSMUST00000205416 453 ntBASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Ifitm6-202ENSMUST00000209328 678 ntAPPRIS P2 TSL 5 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Olfr677-202ENSMUST00000213204 3227 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Olfr875-202ENSMUST00000215128 2039 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 4930556N09Rik-202ENSMUST00000219466 1015 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 CT010498.1-201ENSMUST00000225382 546 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 AC144628.2-201ENSMUST00000227374 352 ntBASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Vmn1r230-201ENSMUST00000053974 951 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Olfr807-201ENSMUST00000059038 997 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Olfr986-201ENSMUST00000062229 1016 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Olfr1111-201ENSMUST00000099860 940 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Gm4788-201ENSMUST00000027612 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Gm43374-201ENSMUST00000202498 2391 ntBASIC3.91□□□□□ -1.78
Col28a1Q2UY11 Gm18609-201ENSMUST00000203370 3601 ntBASIC3.9□□□□□ -1.78
Col28a1Q2UY11 AC123858.1-201ENSMUST00000226948 1874 ntBASIC3.9□□□□□ -1.78
Col28a1Q2UY11 Fam111a-201ENSMUST00000025595 3267 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
Col28a1Q2UY11 Gm44678-201ENSMUST00000207828 2775 ntBASIC3.9□□□□□ -1.78
Col28a1Q2UY11 Ighv1-47-201ENSMUST00000103518 294 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm13567-201ENSMUST00000118026 247 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm15994-201ENSMUST00000118029 402 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm13379-201ENSMUST00000118053 621 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm12891-201ENSMUST00000119358 240 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm5379-201ENSMUST00000120973 826 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm26255-201ENSMUST00000122492 103 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm13470-201ENSMUST00000123911 421 ntTSL 2 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm11775-201ENSMUST00000136500 773 ntTSL 5 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Rpl30-206ENSMUST00000142643 505 ntTSL 2 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm16230-201ENSMUST00000155550 521 ntTSL 3 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm22236-201ENSMUST00000157093 106 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm23554-201ENSMUST00000157818 110 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm15914-201ENSMUST00000161922 309 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Hmgb1-ps7-201ENSMUST00000173370 648 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm5527-201ENSMUST00000179821 642 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Scgb2b17-203ENSMUST00000182673 434 ntAPPRIS P2 TSL 2 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Scgb2b15-201ENSMUST00000182975 434 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Mir6537-201ENSMUST00000184150 110 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Mir7047-201ENSMUST00000184595 64 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm18357-201ENSMUST00000188184 580 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm2077-201ENSMUST00000195017 319 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Smr2-203ENSMUST00000196477 676 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm43624-201ENSMUST00000197368 180 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm43405-201ENSMUST00000198642 337 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm18320-201ENSMUST00000211304 595 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Olfr879-ps1-201ENSMUST00000212455 694 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 AC122317.1-201ENSMUST00000218404 708 ntTSL 5 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm30034-201ENSMUST00000219589 248 ntTSL 5 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 AC119241.1-201ENSMUST00000223651 534 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 AL672194.1-201ENSMUST00000224841 603 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 AC122448.1-201ENSMUST00000226317 772 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 AC167013.2-202ENSMUST00000227035 333 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Olfr943-201ENSMUST00000071617 1079 ntAPPRIS P2 TSL 3 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Vmn1r49-201ENSMUST00000071865 933 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Smr2-201ENSMUST00000087043 676 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 2410024N13Rik-201ENSMUST00000090704 669 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm13630-201ENSMUST00000127849 3650 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Olfr910-201ENSMUST00000215122 1996 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm36951-201ENSMUST00000193840 2687 ntBASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Gm9495-201ENSMUST00000200846 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Vmn1r169-205ENSMUST00000228832 2749 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Skint3-201ENSMUST00000038455 3627 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
Col28a1Q2UY11 Olfr1016-202ENSMUST00000216425 2698 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Skint4-202ENSMUST00000106564 3997 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Skint4-204ENSMUST00000106566 3997 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Ktn1-226ENSMUST00000191511 3962 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm8267-201ENSMUST00000165003 1751 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Olfr741-203ENSMUST00000213903 3305 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm11874-201ENSMUST00000117437 130 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm8475-201ENSMUST00000118211 526 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Vmn1r-ps116-201ENSMUST00000121544 292 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm11931-201ENSMUST00000121630 447 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm25106-201ENSMUST00000122672 134 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm22986-201ENSMUST00000122753 130 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm7855-201ENSMUST00000137737 687 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm16349-201ENSMUST00000149990 394 ntTSL 3 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm23753-201ENSMUST00000157575 149 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm24901-201ENSMUST00000158125 110 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm23583-201ENSMUST00000158533 289 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm16311-201ENSMUST00000161939 702 ntTSL 3 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Vmn2r-ps59-201ENSMUST00000174596 135 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 4930555M17Rik-201ENSMUST00000176666 402 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm28016-201ENSMUST00000184594 196 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm29556-201ENSMUST00000187591 696 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm20268-201ENSMUST00000187932 845 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm28151-201ENSMUST00000189404 951 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm28404-201ENSMUST00000190242 453 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm29433-201ENSMUST00000191241 253 ntTSL 5 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Ikzf2-209ENSMUST00000191262 1146 ntTSL 5 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm37803-201ENSMUST00000191620 711 ntTSL 5 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm8939-201ENSMUST00000192577 964 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm35702-201ENSMUST00000198653 511 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm8041-201ENSMUST00000199755 616 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Dnajc5g-202ENSMUST00000201740 581 ntAPPRIS ALT2 TSL 3 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm43026-201ENSMUST00000202972 325 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm44174-201ENSMUST00000205022 141 ntTSL 2 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm44634-201ENSMUST00000206119 152 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm45312-201ENSMUST00000210566 311 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 Gm5485-201ENSMUST00000212197 628 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 AC134528.1-201ENSMUST00000219156 387 ntTSL 2 BASIC3.89□□□□□ -1.79
Col28a1Q2UY11 AC124489.2-201ENSMUST00000223930 589 ntBASIC3.89□□□□□ -1.79
Col28a1Q2UY11 CT030704.1-201ENSMUST00000227521 699 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 76,532 protein–RNA pairs in 104 ms