Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Zfp991-201ENSMUST00000084149 2813 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
Upf3bQ3ULL6 Samd9l-201ENSMUST00000120087 5330 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
Upf3bQ3ULL6 Krtap24-1-201ENSMUST00000052512 1571 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
Upf3bQ3ULL6 4932412D23Rik-203ENSMUST00000142270 4105 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
Upf3bQ3ULL6 Vmn1r79-203ENSMUST00000227530 5581 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm3234-202ENSMUST00000223301 3250 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm15074-201ENSMUST00000117603 936 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm23234-201ENSMUST00000157304 134 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm24061-201ENSMUST00000157489 120 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm24730-201ENSMUST00000158228 117 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Mir3106-201ENSMUST00000175401 82 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm26061-201ENSMUST00000175584 108 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Mir7658-201ENSMUST00000184043 57 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 4930521E06Rik-201ENSMUST00000186732 905 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm43704-201ENSMUST00000196164 496 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm42750-201ENSMUST00000199745 353 ntTSL 2 BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm34838-201ENSMUST00000209231 958 ntTSL 5 BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm19885-201ENSMUST00000212853 343 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm8681-201ENSMUST00000219115 618 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Ak6-202ENSMUST00000084721 1222 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Olfr833-ps1-201ENSMUST00000086493 913 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Olfr259-201ENSMUST00000099862 939 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Zbtb37-203ENSMUST00000162226 18814 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 5730507A11Rik-201ENSMUST00000204297 3371 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm14415-201ENSMUST00000118260 1578 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gpr174-203ENSMUST00000118820 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Gm5362-201ENSMUST00000211968 3085 ntBASIC3.33□□□□□ -1.88
Upf3bQ3ULL6 Zfp85-202ENSMUST00000144183 2312 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Zfp62-212ENSMUST00000180016 3964 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Trbv16-201ENSMUST00000103274 398 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm24096-201ENSMUST00000103905 110 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Pbsn-202ENSMUST00000114041 697 ntTSL 2 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm2030-201ENSMUST00000119590 1129 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm12587-201ENSMUST00000120180 427 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm6079-201ENSMUST00000121356 404 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm25748-201ENSMUST00000175487 70 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm20612-201ENSMUST00000176318 236 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm20688-201ENSMUST00000176779 512 ntTSL 5 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm27233-201ENSMUST00000184030 307 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm28146-201ENSMUST00000185517 701 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm28784-201ENSMUST00000187817 1011 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm37803-201ENSMUST00000191620 711 ntTSL 5 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm7948-201ENSMUST00000212607 844 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm6980-201ENSMUST00000214327 1003 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 4930545L08Rik-201ENSMUST00000215688 566 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm32281-202ENSMUST00000217220 691 ntTSL 3 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 AC174082.1-201ENSMUST00000221106 307 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 AC118639.1-204ENSMUST00000226401 694 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 AC139294.2-201ENSMUST00000227159 285 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm5239-201ENSMUST00000081864 369 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 2900092N22Rik-201ENSMUST00000193601 1409 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Olfr1447-203ENSMUST00000216989 2586 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Olfr164-202ENSMUST00000216157 2792 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm12128-201ENSMUST00000131013 2914 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Gm44842-201ENSMUST00000209173 3372 ntBASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Olr1-201ENSMUST00000032265 3572 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
Upf3bQ3ULL6 Olfr389-202ENSMUST00000124927 2781 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm7135-202ENSMUST00000191257 1905 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Olfr968-202ENSMUST00000216458 4630 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Mir693-201ENSMUST00000102187 89 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Trav7-2-201ENSMUST00000103636 336 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Hmgb1-ps6-201ENSMUST00000119503 616 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm13273-201ENSMUST00000119737 159 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm11876-201ENSMUST00000120002 269 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm12001-201ENSMUST00000121727 913 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm12729-201ENSMUST00000130088 624 ntTSL 3 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm25185-201ENSMUST00000157754 96 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Ear-ps7-201ENSMUST00000161287 442 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Vmn2r-ps67-201ENSMUST00000172624 385 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm21865-201ENSMUST00000177713 498 ntTSL 5 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm27783-201ENSMUST00000183534 105 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm29259-201ENSMUST00000186396 694 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Tmem167-ps3-201ENSMUST00000186718 178 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm19620-201ENSMUST00000195972 434 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Smr2-202ENSMUST00000196070 813 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm43746-201ENSMUST00000200028 317 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Trav7d-2-201ENSMUST00000200127 337 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm44877-201ENSMUST00000206485 274 ntTSL 5 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm19126-201ENSMUST00000207896 509 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm45826-201ENSMUST00000212226 265 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 AC154184.2-201ENSMUST00000225335 349 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 AC151902.1-201ENSMUST00000227800 375 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Vmn1r68-201ENSMUST00000058362 960 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Olfr295-201ENSMUST00000078447 930 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Olfr1056-201ENSMUST00000099893 1079 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm9696-201ENSMUST00000094227 3050 ntTSL 2 BASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm21034-201ENSMUST00000207390 2608 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm21035-201ENSMUST00000207867 2608 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 AC158979.1-201ENSMUST00000223594 2252 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Gm14387-201ENSMUST00000121827 2055 ntBASIC3.31□□□□□ -1.88
Upf3bQ3ULL6 Vmn1r66-204ENSMUST00000228086 3013 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Gm44715-201ENSMUST00000209049 3839 ntBASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Vmn1r46-203ENSMUST00000226715 10861 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Vmn1r46-205ENSMUST00000228349 10861 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Olfr799-204ENSMUST00000216446 1513 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 3110062G12Rik-201ENSMUST00000192113 1419 ntBASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Scai-201ENSMUST00000038874 10709 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Gm7073-201ENSMUST00000114687 1374 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Gm7073-202ENSMUST00000166562 1369 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
Upf3bQ3ULL6 Gm10488-201ENSMUST00000101657 874 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
Retrieved 100 of 76,532 protein–RNA pairs in 87.5 ms