Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm11719-201ENSMUST00000119399 351 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm13711-201ENSMUST00000119708 453 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm12880-201ENSMUST00000120652 494 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm12900-201ENSMUST00000120919 573 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm12578-201ENSMUST00000121244 417 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Olfr406-201ENSMUST00000133561 1101 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm24734-201ENSMUST00000158860 262 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm15946-201ENSMUST00000160654 423 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm16303-201ENSMUST00000161498 390 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Mir7093-201ENSMUST00000184195 101 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm27940-201ENSMUST00000184449 98 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm18667-201ENSMUST00000186523 484 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 1700063O14Rik-201ENSMUST00000187067 492 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm17916-202ENSMUST00000187634 1187 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm28474-201ENSMUST00000188501 315 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm38053-201ENSMUST00000193938 160 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Trbv11-201ENSMUST00000194354 260 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm42805-201ENSMUST00000196158 276 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm30784-201ENSMUST00000204491 794 ntTSL 2 BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 CT025611.2-201ENSMUST00000220475 879 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm4263-202ENSMUST00000221392 667 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 AC174797.3-202ENSMUST00000224578 587 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 CT025602.1-201ENSMUST00000227281 382 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm5689-201ENSMUST00000041389 294 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Mir325-201ENSMUST00000083491 98 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 1700010D01Rik-201ENSMUST00000096366 507 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Zfp708-201ENSMUST00000109742 2416 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Gm43826-201ENSMUST00000199604 2612 ntBASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Ppp1r42-201ENSMUST00000027049 1425 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Olfr59-201ENSMUST00000143976 3088 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Olfr388-ps1-201ENSMUST00000118336 2129 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
Col28a1Q2UY11 Zfp873-201ENSMUST00000105313 1893 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
Col28a1Q2UY11 Gm2026-201ENSMUST00000109007 1621 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
Col28a1Q2UY11 2310003L06Rik-201ENSMUST00000007601 1603 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
Col28a1Q2UY11 Gm26650-204ENSMUST00000181881 2078 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm37393-201ENSMUST00000195118 3870 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm43844-201ENSMUST00000202926 5605 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 AC163660.3-201ENSMUST00000224253 1563 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Olfr826-203ENSMUST00000216661 2858 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 AC126673.1-201ENSMUST00000223208 3856 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm24273-201ENSMUST00000102332 164 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Sult2a-ps3-201ENSMUST00000117899 428 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Vmn1r-ps135-201ENSMUST00000120909 595 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Defa-ps12-201ENSMUST00000122353 193 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm24225-201ENSMUST00000158825 98 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Airn-203ENSMUST00000159791 485 ntTSL 3 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm22857-201ENSMUST00000174969 134 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm23638-201ENSMUST00000175073 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm23158-201ENSMUST00000175076 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm22907-201ENSMUST00000175198 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm22625-201ENSMUST00000175382 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm22875-201ENSMUST00000175449 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm25197-201ENSMUST00000175516 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm27857-201ENSMUST00000176930 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm20673-201ENSMUST00000177167 430 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm26268-201ENSMUST00000177685 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm22166-201ENSMUST00000178419 121 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm20795-201ENSMUST00000178528 699 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm23681-201ENSMUST00000178821 126 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm23288-201ENSMUST00000179213 121 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 A630095N17Rik-201ENSMUST00000179573 648 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Ifi213-205ENSMUST00000180215 643 ntAPPRIS P2 TSL 3 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Cox6b2-206ENSMUST00000182738 423 ntTSL 2 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Ranbp2-ps4-201ENSMUST00000183481 385 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm28595-201ENSMUST00000186223 437 ntTSL 5 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm42991-201ENSMUST00000196468 3837 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Hcfc1r1-ps2-201ENSMUST00000199379 339 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm30484-201ENSMUST00000200327 449 ntTSL 5 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm35325-201ENSMUST00000208979 771 ntTSL 2 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Olfr1088-ps1-201ENSMUST00000213686 863 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm40608-201ENSMUST00000213692 654 ntTSL 3 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 CAAA01216754.4-202ENSMUST00000215276 610 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm18016-201ENSMUST00000216119 801 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 1700030L22Rik-202ENSMUST00000222223 704 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 AC105407.3-201ENSMUST00000224161 648 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 AC102575.1-201ENSMUST00000225348 547 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Olfr339-201ENSMUST00000071437 930 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Olfr134-201ENSMUST00000074883 939 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Vmn1r81-201ENSMUST00000086232 921 ntAPPRIS P2 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm21750-201ENSMUST00000098874 1497 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm29325-201ENSMUST00000190705 2528 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Olfr822-202ENSMUST00000216879 2663 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 AC156560.3-201ENSMUST00000222978 3841 ntBASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm15226-201ENSMUST00000156526 2971 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 BC002059-202ENSMUST00000190415 1964 ntTSL 2 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Gm8104-201ENSMUST00000168165 1761 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 Zfp932-207ENSMUST00000187241 1581 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
Col28a1Q2UY11 4921515E04Rik-203ENSMUST00000227364 2309 ntBASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm10745-201ENSMUST00000192022 1523 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Fbxw14-201ENSMUST00000112041 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm26655-203ENSMUST00000181095 2078 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm26680-203ENSMUST00000181701 2078 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm26630-204ENSMUST00000181759 2078 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
Col28a1Q2UY11 AC174797.3-203ENSMUST00000225749 2078 ntBASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Olfr112-205ENSMUST00000213274 3558 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Olfr706-202ENSMUST00000213918 4828 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm43197-201ENSMUST00000201493 2583 ntBASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm11698-201ENSMUST00000117948 455 ntBASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm9078-201ENSMUST00000119126 617 ntBASIC4.01□□□□□ -1.77
Col28a1Q2UY11 Gm12607-201ENSMUST00000120724 493 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 76,532 protein–RNA pairs in 96.6 ms