Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Gm8969-201ENSMUST00000199694 526 ntBASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Cpsf3Q9QXK7 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Gm7791-201ENSMUST00000219066 539 ntBASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cpsf3Q9QXK7 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Gm6433-201ENSMUST00000118634 875 ntBASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Gm9731-201ENSMUST00000209480 747 ntBASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cpsf3Q9QXK7 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Gm17661-201ENSMUST00000170317 270 ntBASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cpsf3Q9QXK7 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Il3ra-202ENSMUST00000223589 738 ntBASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.61■□□□□ 0.57
Cpsf3Q9QXK7 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Cpsf3Q9QXK7 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Cpsf3Q9QXK7 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms