Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Rarb-207ENSMUST00000225921 2756 ntBASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Gm21559-201ENSMUST00000220638 855 ntBASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Il3ra-202ENSMUST00000223589 738 ntBASIC18.73■□□□□ 0.59
Trim54Q9ERP3 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Gm8587-201ENSMUST00000076538 843 ntBASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Idnk-204ENSMUST00000226010 1898 ntBASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim54Q9ERP3 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
Trim54Q9ERP3 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Gm25016-201ENSMUST00000158399 131 ntBASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Gm27389-201ENSMUST00000183622 195 ntBASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim54Q9ERP3 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.71■□□□□ 0.59
Trim54Q9ERP3 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim54Q9ERP3 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Gm7213-201ENSMUST00000215977 950 ntBASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trim54Q9ERP3 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trim54Q9ERP3 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms