Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgn3Q9DCB1 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgn3Q9DCB1 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgn3Q9DCB1 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Gm26833-201ENSMUST00000180899 440 ntBASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Hmgn3Q9DCB1 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Hmgn3Q9DCB1 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Hmgn3Q9DCB1 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.27■□□□□ 0.19
Hmgn3Q9DCB1 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Gm43017-201ENSMUST00000198296 752 ntBASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Gm40848-201ENSMUST00000221998 324 ntBASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.26■□□□□ 0.19
Hmgn3Q9DCB1 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Hmgn3Q9DCB1 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms