Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Gm10418-201ENSMUST00000100943 576 ntBASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Gm29791-202ENSMUST00000207888 369 ntBASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.25■□□□□ 0.67
Ccdc43Q9CR29 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.24■□□□□ 0.67
Ccdc43Q9CR29 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc43Q9CR29 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Gm11249-201ENSMUST00000117071 859 ntBASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc43Q9CR29 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Gm10138-203ENSMUST00000206952 366 ntBASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Gm20049-201ENSMUST00000219950 730 ntBASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ccdc43Q9CR29 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms