Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Gm5874-201ENSMUST00000096101 508 ntBASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ccdc28aQ8CEI3 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Mir2861-201ENSMUST00000175539 82 ntBASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ccdc28aQ8CEI3 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ccdc28aQ8CEI3 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ccdc28aQ8CEI3 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ccdc28aQ8CEI3 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Ccdc28aQ8CEI3 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ccdc28aQ8CEI3 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ccdc28aQ8CEI3 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Ccdc28aQ8CEI3 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 Gm13401-201ENSMUST00000117074 291 ntBASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.24■□□□□ 0.51
Ccdc28aQ8CEI3 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms