Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm9731-201ENSMUST00000209480 747 ntBASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim47Q8C0E3 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim47Q8C0E3 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Gm2274-201ENSMUST00000184539 609 ntBASIC19.17■□□□□ 0.66
Trim47Q8C0E3 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Il3ra-202ENSMUST00000223589 738 ntBASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim47Q8C0E3 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Gm17661-201ENSMUST00000170317 270 ntBASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim47Q8C0E3 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Gm18959-201ENSMUST00000208954 655 ntBASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim47Q8C0E3 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim47Q8C0E3 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Gm45058-201ENSMUST00000205810 766 ntBASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Trim47Q8C0E3 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms