Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Rarb-207ENSMUST00000225921 2756 ntBASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ubfd1Q78JW9 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Spsb2-203ENSMUST00000112473 1322 ntBASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC16.85■□□□□ 0.29
Ubfd1Q78JW9 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Gm23634-201ENSMUST00000175071 91 ntBASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ubfd1Q78JW9 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Mir1668-201ENSMUST00000184114 107 ntBASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Ubfd1Q78JW9 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Gm27389-201ENSMUST00000183622 195 ntBASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Ubfd1Q78JW9 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubfd1Q78JW9 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms