Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Gm6659-201ENSMUST00000174752 547 ntBASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Gm27463-201ENSMUST00000183569 57 ntBASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb4Q6P8W9 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb4Q6P8W9 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Gm38027-201ENSMUST00000192315 235 ntBASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb4Q6P8W9 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Gm21362-201ENSMUST00000194272 928 ntBASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb4Q6P8W9 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgb4Q6P8W9 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgb4Q6P8W9 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgb4Q6P8W9 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.08■□□□□ 0.49
Hmgb4Q6P8W9 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Gm4974-201ENSMUST00000209974 875 ntBASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Gm7367-201ENSMUST00000057611 492 ntBASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb4Q6P8W9 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Hmgb4Q6P8W9 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms