Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Gm6576-201ENSMUST00000169678 883 ntBASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sh3rf1Q69ZI1 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Sh3rf1Q69ZI1 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Gm18666-201ENSMUST00000190039 958 ntBASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.52■□□□□ 0.4
Sh3rf1Q69ZI1 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Sh3rf1Q69ZI1 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Gm22325-201ENSMUST00000158904 308 ntBASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Sh3rf1Q69ZI1 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Gm15847-201ENSMUST00000121417 1065 ntBASIC17.5■□□□□ 0.39
Sh3rf1Q69ZI1 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms