Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ubr3Q5U430 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Gm4995-201ENSMUST00000117247 432 ntBASIC21.06■□□□□ 0.96
Ubr3Q5U430 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC21.06■□□□□ 0.96
Ubr3Q5U430 Gm12350-201ENSMUST00000121208 462 ntBASIC21.06■□□□□ 0.96
Ubr3Q5U430 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ubr3Q5U430 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Gm6190-201ENSMUST00000220683 1374 ntBASIC21.05■□□□□ 0.96
Ubr3Q5U430 Gm11779-201ENSMUST00000118541 368 ntBASIC21.05■□□□□ 0.96
Ubr3Q5U430 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC21.05■□□□□ 0.96
Ubr3Q5U430 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC21.05■□□□□ 0.96
Ubr3Q5U430 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Gm6296-201ENSMUST00000222599 943 ntBASIC21.05■□□□□ 0.96
Ubr3Q5U430 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ubr3Q5U430 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC21.04■□□□□ 0.96
Ubr3Q5U430 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Gm11594-201ENSMUST00000122313 162 ntBASIC21.04■□□□□ 0.96
Ubr3Q5U430 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ubr3Q5U430 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC21.03■□□□□ 0.96
Ubr3Q5U430 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ubr3Q5U430 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ubr3Q5U430 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ubr3Q5U430 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC21.02■□□□□ 0.96
Ubr3Q5U430 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ubr3Q5U430 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC21.02■□□□□ 0.96
Ubr3Q5U430 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC21.02■□□□□ 0.96
Ubr3Q5U430 Gm10060-201ENSMUST00000212002 111 ntBASIC21.02■□□□□ 0.96
Ubr3Q5U430 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ubr3Q5U430 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ubr3Q5U430 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ubr3Q5U430 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ubr3Q5U430 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ubr3Q5U430 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Gm35558-201ENSMUST00000222675 2219 ntBASIC21.01■□□□□ 0.95
Ubr3Q5U430 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.01■□□□□ 0.95
Ubr3Q5U430 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.01■□□□□ 0.95
Ubr3Q5U430 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 AC108846.1-201ENSMUST00000214531 513 ntBASIC21.01■□□□□ 0.95
Ubr3Q5U430 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ubr3Q5U430 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ubr3Q5U430 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ubr3Q5U430 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms