Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Gm5417-201ENSMUST00000079706 384 ntBASIC20.38■□□□□ 0.85
Limch1Q3UH68 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Gm45560-201ENSMUST00000211492 1472 ntBASIC20.37■□□□□ 0.85
Limch1Q3UH68 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Limch1Q3UH68 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Limch1Q3UH68 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.36■□□□□ 0.85
Limch1Q3UH68 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Limch1Q3UH68 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.35■□□□□ 0.85
Limch1Q3UH68 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Limch1Q3UH68 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Gm6433-201ENSMUST00000118634 875 ntBASIC20.34■□□□□ 0.85
Limch1Q3UH68 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Limch1Q3UH68 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.33■□□□□ 0.85
Limch1Q3UH68 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Limch1Q3UH68 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Limch1Q3UH68 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Limch1Q3UH68 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.33■□□□□ 0.85
Limch1Q3UH68 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Limch1Q3UH68 Gm43183-201ENSMUST00000200632 547 ntBASIC20.33■□□□□ 0.85
Limch1Q3UH68 Gm43799-201ENSMUST00000201845 579 ntBASIC20.33■□□□□ 0.85
Limch1Q3UH68 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.33■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms