Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC20.43■□□□□ 0.86
Rnf180Q3U827 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rnf180Q3U827 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rnf180Q3U827 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Rnf180Q3U827 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Rnf180Q3U827 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
Rnf180Q3U827 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rnf180Q3U827 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 AC122901.1-201ENSMUST00000214203 1790 ntBASIC20.42■□□□□ 0.86
Rnf180Q3U827 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 AA543401-201ENSMUST00000164248 1269 ntBASIC20.42■□□□□ 0.86
Rnf180Q3U827 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC20.42■□□□□ 0.86
Rnf180Q3U827 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC20.42■□□□□ 0.86
Rnf180Q3U827 AC140375.2-201ENSMUST00000225283 584 ntBASIC20.42■□□□□ 0.86
Rnf180Q3U827 Gm15500-202ENSMUST00000071641 1019 ntBASIC20.42■□□□□ 0.86
Rnf180Q3U827 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rnf180Q3U827 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rnf180Q3U827 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rnf180Q3U827 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.4■□□□□ 0.86
Rnf180Q3U827 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC20.4■□□□□ 0.86
Rnf180Q3U827 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC20.4■□□□□ 0.86
Rnf180Q3U827 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
Rnf180Q3U827 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC20.4■□□□□ 0.86
Rnf180Q3U827 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
Rnf180Q3U827 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Rnf180Q3U827 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Rnf180Q3U827 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Rnf180Q3U827 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Gm6184-201ENSMUST00000120403 1261 ntBASIC20.39■□□□□ 0.85
Rnf180Q3U827 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.39■□□□□ 0.85
Rnf180Q3U827 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Rnf180Q3U827 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rnf180Q3U827 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.38■□□□□ 0.85
Rnf180Q3U827 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf180Q3U827 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Gm20949-201ENSMUST00000206478 952 ntBASIC20.38■□□□□ 0.85
Rnf180Q3U827 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rnf180Q3U827 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Gm43767-201ENSMUST00000198933 381 ntBASIC20.37■□□□□ 0.85
Rnf180Q3U827 AC084391.1-201ENSMUST00000200651 141 ntBASIC20.37■□□□□ 0.85
Rnf180Q3U827 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rnf180Q3U827 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf180Q3U827 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf180Q3U827 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Rnf180Q3U827 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rnf180Q3U827 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.36■□□□□ 0.85
Rnf180Q3U827 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms