Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Gm1818-201ENSMUST00000169406 1184 ntBASIC22■■□□□ 1.11
Ddb1Q3U1J4 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 AC108846.1-201ENSMUST00000214531 513 ntBASIC22■■□□□ 1.11
Ddb1Q3U1J4 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ddb1Q3U1J4 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 AC138767.1-201ENSMUST00000222661 415 ntBASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Gm19721-201ENSMUST00000195284 1764 ntBASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ddb1Q3U1J4 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Gm1401-201ENSMUST00000122048 772 ntBASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ddb1Q3U1J4 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ddb1Q3U1J4 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ddb1Q3U1J4 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Mir8112-201ENSMUST00000184382 131 ntBASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Gm43272-201ENSMUST00000200599 1584 ntBASIC21.95■■□□□ 1.1
Ddb1Q3U1J4 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Gm43213-201ENSMUST00000151866 1790 ntBASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Ddb1Q3U1J4 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.93■■□□□ 1.1
Ddb1Q3U1J4 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
Ddb1Q3U1J4 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Ddb1Q3U1J4 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC21.93■■□□□ 1.1
Ddb1Q3U1J4 Gm6376-201ENSMUST00000209407 580 ntBASIC21.93■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms