Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col28a1Q2UY11 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col28a1Q2UY11 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 AC135637.1-201ENSMUST00000227750 365 ntBASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col28a1Q2UY11 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Gm10655-201ENSMUST00000098658 1397 ntBASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Gm6211-202ENSMUST00000167849 925 ntBASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col28a1Q2UY11 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col28a1Q2UY11 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Mir7071-201ENSMUST00000184847 69 ntBASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col28a1Q2UY11 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms