Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msx1P13297 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msx1P13297 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msx1P13297 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Msx1P13297 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Msx1P13297 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC16.41■□□□□ 0.22
Msx1P13297 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Msx1P13297 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.41■□□□□ 0.22
Msx1P13297 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Idnk-204ENSMUST00000226010 1898 ntBASIC16.41■□□□□ 0.22
Msx1P13297 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msx1P13297 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Msx1P13297 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.4■□□□□ 0.22
Msx1P13297 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Msx1P13297 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC16.4■□□□□ 0.22
Msx1P13297 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Msx1P13297 Gm18032-201ENSMUST00000222541 538 ntBASIC16.4■□□□□ 0.22
Msx1P13297 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Msx1P13297 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Msx1P13297 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Msx1P13297 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC16.4■□□□□ 0.22
Msx1P13297 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC16.39■□□□□ 0.21
Msx1P13297 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Gm45058-201ENSMUST00000205810 766 ntBASIC16.39■□□□□ 0.21
Msx1P13297 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Msx1P13297 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.39■□□□□ 0.21
Msx1P13297 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.39■□□□□ 0.21
Msx1P13297 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Msx1P13297 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.38■□□□□ 0.21
Msx1P13297 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Msx1P13297 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.38■□□□□ 0.21
Msx1P13297 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16.38■□□□□ 0.21
Msx1P13297 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Msx1P13297 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC16.38■□□□□ 0.21
Msx1P13297 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC16.37■□□□□ 0.21
Msx1P13297 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Gm8969-201ENSMUST00000199694 526 ntBASIC16.37■□□□□ 0.21
Msx1P13297 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.37■□□□□ 0.21
Msx1P13297 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Msx1P13297 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Msx1P13297 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms