Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC20.7■□□□□ 0.9
Col3a1P08121 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col3a1P08121 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col3a1P08121 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col3a1P08121 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Col3a1P08121 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col3a1P08121 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col3a1P08121 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col3a1P08121 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC20.69■□□□□ 0.9
Col3a1P08121 Mir770-201ENSMUST00000103252 94 ntBASIC20.69■□□□□ 0.9
Col3a1P08121 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
Col3a1P08121 Gm17971-201ENSMUST00000190239 806 ntBASIC20.69■□□□□ 0.9
Col3a1P08121 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Col3a1P08121 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
Col3a1P08121 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC20.69■□□□□ 0.9
Col3a1P08121 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Col3a1P08121 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col3a1P08121 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col3a1P08121 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col3a1P08121 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col3a1P08121 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col3a1P08121 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Col3a1P08121 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col3a1P08121 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col3a1P08121 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col3a1P08121 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC20.67■□□□□ 0.9
Col3a1P08121 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col3a1P08121 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC20.67■□□□□ 0.9
Col3a1P08121 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC20.66■□□□□ 0.9
Col3a1P08121 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC20.66■□□□□ 0.9
Col3a1P08121 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Col3a1P08121 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col3a1P08121 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.66■□□□□ 0.9
Col3a1P08121 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Gm13186-201ENSMUST00000118031 316 ntBASIC20.65■□□□□ 0.9
Col3a1P08121 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC20.65■□□□□ 0.9
Col3a1P08121 Gm8969-201ENSMUST00000199694 526 ntBASIC20.65■□□□□ 0.9
Col3a1P08121 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.65■□□□□ 0.9
Col3a1P08121 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.65■□□□□ 0.9
Col3a1P08121 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col3a1P08121 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col3a1P08121 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col3a1P08121 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Col3a1P08121 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Col3a1P08121 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.64■□□□□ 0.89
Col3a1P08121 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col3a1P08121 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.64■□□□□ 0.89
Col3a1P08121 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col3a1P08121 Gm28033-201ENSMUST00000184224 96 ntBASIC20.63■□□□□ 0.89
Col3a1P08121 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col3a1P08121 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col3a1P08121 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Col3a1P08121 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col3a1P08121 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col3a1P08121 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col3a1P08121 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col3a1P08121 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Col3a1P08121 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC20.62■□□□□ 0.89
Col3a1P08121 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
Col3a1P08121 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC20.62■□□□□ 0.89
Col3a1P08121 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Col3a1P08121 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms