Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC14.41□□□□□ -0.1
Hmgb3O54879 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Hmgb3O54879 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC14.41□□□□□ -0.1
Hmgb3O54879 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
Hmgb3O54879 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hmgb3O54879 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.4□□□□□ -0.1
Hmgb3O54879 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Hmgb3O54879 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC14.4□□□□□ -0.1
Hmgb3O54879 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC14.4□□□□□ -0.1
Hmgb3O54879 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Hmgb3O54879 Gm8309-201ENSMUST00000206627 1448 ntBASIC14.4□□□□□ -0.1
Hmgb3O54879 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Hmgb3O54879 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC14.39□□□□□ -0.11
Hmgb3O54879 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Hmgb3O54879 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Hmgb3O54879 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC14.39□□□□□ -0.11
Hmgb3O54879 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Gm45774-201ENSMUST00000211992 2665 ntBASIC14.39□□□□□ -0.11
Hmgb3O54879 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Hmgb3O54879 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hmgb3O54879 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC14.38□□□□□ -0.11
Hmgb3O54879 Gm15743-202ENSMUST00000182690 1901 ntBASIC14.38□□□□□ -0.11
Hmgb3O54879 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC14.38□□□□□ -0.11
Hmgb3O54879 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hmgb3O54879 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Hmgb3O54879 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Hmgb3O54879 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Hmgb3O54879 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC14.37□□□□□ -0.11
Hmgb3O54879 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms