Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm16084-201ENSMUST00000148122 620 ntTSL 3 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Snrpe-203ENSMUST00000166291 360 ntTSL 3 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Obox4-ps15-201ENSMUST00000178057 1140 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Obox4-ps19-201ENSMUST00000178284 1140 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Obox4-ps20-201ENSMUST00000179591 1140 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Obox4-ps21-201ENSMUST00000179856 1140 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm27805-201ENSMUST00000184513 79 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Mir6418-201ENSMUST00000185075 115 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 A930005H10Rik-205ENSMUST00000187055 436 ntTSL 3 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Rpl26-ps3-201ENSMUST00000195115 435 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Csn1s2b-204ENSMUST00000197301 627 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm42604-201ENSMUST00000200077 801 ntTSL 3 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm42927-201ENSMUST00000200624 3841 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Olfr490-202ENSMUST00000211345 1275 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Olfr534-ps1-201ENSMUST00000211776 870 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm8106-201ENSMUST00000213123 523 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC166060.1-201ENSMUST00000213509 425 ntTSL 5 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC134334.1-201ENSMUST00000214277 255 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC073947.3-201ENSMUST00000215576 766 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC131720.2-201ENSMUST00000220420 431 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC115750.1-201ENSMUST00000220441 567 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC120540.1-201ENSMUST00000221879 324 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm46401-202ENSMUST00000223425 803 ntTSL 5 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC192333.1-201ENSMUST00000224573 376 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC154548.1-201ENSMUST00000225844 3838 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 CT009711.3-201ENSMUST00000225882 250 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 AC144798.1-201ENSMUST00000228120 391 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm10717-201ENSMUST00000075573 684 ntTSL 5 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Skint11-201ENSMUST00000079915 820 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Tas2r115-201ENSMUST00000095394 1033 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Ube2v2-201ENSMUST00000096234 609 ntTSL 3 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Olfr1253-201ENSMUST00000099765 957 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Olfr992-201ENSMUST00000099927 930 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Zfp595-201ENSMUST00000109735 3896 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Olfr819-202ENSMUST00000216322 3930 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Polk-205ENSMUST00000221899 2319 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm43913-201ENSMUST00000203924 3029 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Synpr-207ENSMUST00000223583 3362 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm43327-201ENSMUST00000199285 4055 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Ddx60-202ENSMUST00000093485 5989 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm38069-201ENSMUST00000195360 2144 ntBASIC4.12□□□□□ -1.75
Col28a1Q2UY11 Gm43824-201ENSMUST00000199042 2588 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Cul4b-203ENSMUST00000115118 3344 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm42536-201ENSMUST00000197562 1613 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Olfr1263-204ENSMUST00000217065 4186 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 AC152162.1-201ENSMUST00000225910 2917 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Trav12d-2-201ENSMUST00000103593 341 ntAPPRIS ALT2 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Trav12n-2-201ENSMUST00000103619 341 ntAPPRIS ALT2 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm22019-201ENSMUST00000104359 96 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm24067-201ENSMUST00000104514 85 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm6096-201ENSMUST00000105172 456 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm3086-201ENSMUST00000110560 620 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm11859-201ENSMUST00000118099 455 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm14753-201ENSMUST00000118503 246 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm15060-201ENSMUST00000119550 948 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Tpt1-ps1-201ENSMUST00000120257 436 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm11522-201ENSMUST00000120533 176 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm14162-201ENSMUST00000121985 601 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Llph-ps2-201ENSMUST00000122000 393 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm4912-201ENSMUST00000122212 1044 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm23867-201ENSMUST00000122649 274 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm13335-201ENSMUST00000129994 471 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 R3hcc1l-202ENSMUST00000160107 950 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Klrc1-204ENSMUST00000169545 676 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm17919-201ENSMUST00000173344 312 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm8356-203ENSMUST00000178896 615 ntTSL 5 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm21171-201ENSMUST00000180048 673 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm27342-201ENSMUST00000183530 109 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm4035-202ENSMUST00000190684 526 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm18291-201ENSMUST00000190791 301 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm42476-201ENSMUST00000198860 554 ntTSL 3 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm19237-201ENSMUST00000205036 1132 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 AC132384.5-201ENSMUST00000218562 226 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Ifngas1-201ENSMUST00000220034 1121 ntTSL 2 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 AC165164.2-201ENSMUST00000220313 392 ntTSL 3 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 CT009713.9-201ENSMUST00000223604 389 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 AC154390.1-201ENSMUST00000225629 277 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 AC131747.1-201ENSMUST00000226159 793 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 AC117202.2-201ENSMUST00000226491 1101 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 AC109172.2-201ENSMUST00000228792 381 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Spink1-201ENSMUST00000025381 422 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Olfr103-201ENSMUST00000058826 942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Olfr924-201ENSMUST00000072977 927 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Olfr347-201ENSMUST00000078761 943 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm23099-201ENSMUST00000083454 139 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm26111-201ENSMUST00000083969 106 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm6361-201ENSMUST00000091031 435 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Olfr1000-201ENSMUST00000099921 945 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Vmn2r77-201ENSMUST00000164996 2565 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Zfp850-203ENSMUST00000180502 6163 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Kcnrg-201ENSMUST00000051184 1766 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Olfr235-204ENSMUST00000214613 2217 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Zfp426-213ENSMUST00000169558 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm10256-201ENSMUST00000179404 1358 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Olfr1368-202ENSMUST00000216039 1389 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm7709-201ENSMUST00000199391 1858 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Btbd35f10-201ENSMUST00000178621 1952 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Adam26b-201ENSMUST00000080135 2476 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm37626-201ENSMUST00000194332 4563 ntBASIC4.11□□□□□ -1.75
Col28a1Q2UY11 Gm45131-201ENSMUST00000208051 2582 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 76,532 protein–RNA pairs in 80.5 ms