Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm23627-201ENSMUST00000082459 107 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm22502-201ENSMUST00000082488 107 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm24149-201ENSMUST00000082757 107 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Vmn1r34-204ENSMUST00000226999 3048 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Bclaf1-201ENSMUST00000043881 5437 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Mier1-202ENSMUST00000097945 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 St18-213ENSMUST00000163727 5604 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Kcnh8-201ENSMUST00000039366 4287 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Lpp-203ENSMUST00000115314 14854 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Chd9-202ENSMUST00000109614 11565 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Alg11-201ENSMUST00000072572 4960 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm43696-201ENSMUST00000199385 6071 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 4932411K12Rik-201ENSMUST00000190493 3156 ntTSL 2 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Olfr376-203ENSMUST00000170592 3211 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Hgf-204ENSMUST00000199581 3468 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm3616-201ENSMUST00000174430 2514 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm3683-201ENSMUST00000175701 2513 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Hmgb1-ps5-201ENSMUST00000121058 557 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Hmcn1-202ENSMUST00000137197 16554 ntTSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm15521-201ENSMUST00000141752 835 ntTSL 2 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm15340-201ENSMUST00000144984 704 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm15323-201ENSMUST00000156109 429 ntTSL 3 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm24534-201ENSMUST00000157949 291 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm17196-201ENSMUST00000164074 345 ntTSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm23977-201ENSMUST00000177871 74 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm37659-201ENSMUST00000194574 111 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm43115-201ENSMUST00000196244 160 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm43150-201ENSMUST00000200931 636 ntTSL 3 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm32817-201ENSMUST00000210007 689 ntTSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 AC153141.1-201ENSMUST00000218636 501 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 AC125531.1-201ENSMUST00000219849 221 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 AC158803.3-201ENSMUST00000220024 211 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 AL589742.1-201ENSMUST00000226034 349 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Olfr881-201ENSMUST00000074611 948 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm23515-201ENSMUST00000082829 107 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Mir19a-201ENSMUST00000083482 82 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Cftr-204ENSMUST00000129452 2835 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Olfr270-204ENSMUST00000215127 3145 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Olfr818-203ENSMUST00000215527 1849 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Olfr983-202ENSMUST00000213087 6196 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Olfr733-202ENSMUST00000214372 3530 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Vmn1r185-209ENSMUST00000228133 5749 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Olfr1031-202ENSMUST00000216807 1946 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm10319-201ENSMUST00000078431 1355 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm35629-201ENSMUST00000209684 2241 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Nxt2-202ENSMUST00000112913 2538 ntTSL 3 BASIC5.66□□□□□ -1.5
Trim56Q80VI1 Gm37115-201ENSMUST00000193750 2849 ntBASIC5.66□□□□□ -1.5
Trim56Q80VI1 Vmn2r33-201ENSMUST00000165921 2586 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Vmn2r-ps57-201ENSMUST00000173861 2598 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Epha7-203ENSMUST00000108191 6615 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm11264-201ENSMUST00000143755 2969 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Acsm3-205ENSMUST00000106529 3295 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim56Q80VI1 AC122382.2-201ENSMUST00000225128 3602 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Depdc1a-203ENSMUST00000120272 3323 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim56Q80VI1 R3hdm1-201ENSMUST00000036288 4795 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm23744-201ENSMUST00000104231 149 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm11262-201ENSMUST00000119326 833 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm14852-201ENSMUST00000120065 647 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm14591-201ENSMUST00000120407 518 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm12876-201ENSMUST00000120975 408 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm15168-201ENSMUST00000121057 316 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm11909-201ENSMUST00000121424 759 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm14736-201ENSMUST00000121470 336 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm15905-201ENSMUST00000137042 298 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm22597-201ENSMUST00000157602 80 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm22940-201ENSMUST00000158560 155 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 4430402I18Rik-203ENSMUST00000160542 1057 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm17152-201ENSMUST00000172430 535 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Vmn2r-ps18-201ENSMUST00000177972 380 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Mir6986-201ENSMUST00000184483 58 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm28625-201ENSMUST00000188309 205 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 1700023F02Rik-203ENSMUST00000189619 473 ntTSL 3 BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm37030-201ENSMUST00000194254 295 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm3143-201ENSMUST00000196308 580 ntTSL 3 BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gstm2-ps1-201ENSMUST00000201478 657 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm45096-201ENSMUST00000205833 427 ntTSL 3 BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm44816-201ENSMUST00000206666 477 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Gm44959-201ENSMUST00000209127 231 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Prl-203ENSMUST00000224228 888 ntAPPRIS ALT2 BASIC5.65□□□□□ -1.5
Trim56Q80VI1 AC115289.1-201ENSMUST00000224915 522 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 AC117588.2-201ENSMUST00000228340 311 ntBASIC5.65□□□□□ -1.5
Trim56Q80VI1 Olfr825-201ENSMUST00000076814 1159 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Xlr5c-201ENSMUST00000088450 540 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim56Q80VI1 Olfr1195-202ENSMUST00000213545 2585 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Trim56Q80VI1 Dnah8-201ENSMUST00000170651 14583 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Trim56Q80VI1 Vmn1r202-202ENSMUST00000228020 5441 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
Trim56Q80VI1 Gm7195-201ENSMUST00000190869 1707 ntBASIC5.65□□□□□ -1.51
Trim56Q80VI1 5330434G04Rik-202ENSMUST00000136406 3545 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
Trim56Q80VI1 Olfr620-201ENSMUST00000052152 3157 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
Trim56Q80VI1 Scn1a-204ENSMUST00000112371 8287 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
Trim56Q80VI1 Gm43654-201ENSMUST00000200664 3417 ntBASIC5.64□□□□□ -1.51
Trim56Q80VI1 Gm33609-201ENSMUST00000198559 2694 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Trim56Q80VI1 Gm44860-201ENSMUST00000208473 2346 ntBASIC5.64□□□□□ -1.51
Trim56Q80VI1 Havcr2-201ENSMUST00000020668 2721 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Trim56Q80VI1 Olfr341-202ENSMUST00000213300 6634 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
Trim56Q80VI1 Zfp287-201ENSMUST00000005399 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
Trim56Q80VI1 Kcnma1-204ENSMUST00000112423 3664 ntTSL 5 BASIC5.64□□□□□ -1.51
Trim56Q80VI1 AC121569.1-201ENSMUST00000221043 3666 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Trim56Q80VI1 Gm22021-201ENSMUST00000104353 107 ntBASIC5.64□□□□□ -1.51
Trim56Q80VI1 Gm15025-201ENSMUST00000118434 418 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms