Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm42481-201ENSMUST00000196822 2178 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm34639-201ENSMUST00000222648 2241 ntTSL 5 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Amy2a5-201ENSMUST00000098673 3715 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Fat2-201ENSMUST00000068853 14528 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Fam26d-201ENSMUST00000048052 3711 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Rnf40Q3U319 AC123705.2-201ENSMUST00000221653 2009 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Polk-201ENSMUST00000022172 4225 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Acvr1c-202ENSMUST00000100085 4289 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm8744-201ENSMUST00000204475 3581 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Vmn2r28-201ENSMUST00000086297 3785 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm24423-201ENSMUST00000101982 106 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Ighv14-1-201ENSMUST00000103463 351 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm25875-201ENSMUST00000104323 107 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm14733-201ENSMUST00000117680 133 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm11600-201ENSMUST00000119592 240 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Mup-ps20-201ENSMUST00000121132 389 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm25624-201ENSMUST00000157222 275 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm23756-201ENSMUST00000157582 114 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm25555-201ENSMUST00000158078 111 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm25520-201ENSMUST00000158389 118 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm16113-201ENSMUST00000159629 372 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm2976-201ENSMUST00000160362 513 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm16102-201ENSMUST00000160955 420 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Obox3-ps7-201ENSMUST00000176465 410 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm24264-201ENSMUST00000179835 94 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Hmgb1-rs16-201ENSMUST00000185927 613 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm28289-201ENSMUST00000189331 315 ntTSL 5 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Igkv4-77-201ENSMUST00000199410 352 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm44796-201ENSMUST00000205272 626 ntTSL 2 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm44539-201ENSMUST00000206010 238 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 AC155712.1-201ENSMUST00000219704 160 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm40477-202ENSMUST00000221505 881 ntTSL 3 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 AC159205.4-201ENSMUST00000225964 704 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Olfr726-201ENSMUST00000072370 966 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm6104-201ENSMUST00000078030 603 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm25204-201ENSMUST00000082843 106 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm7381-201ENSMUST00000098958 300 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Ckap5-201ENSMUST00000046769 6511 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Zfp184-205ENSMUST00000176511 2703 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Olfr979-202ENSMUST00000215523 3397 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Olfr855-202ENSMUST00000215587 1797 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 AC168274.1-201ENSMUST00000218657 1864 ntTSL 5 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Gm14421-201ENSMUST00000121755 1958 ntBASIC6.13□□□□□ -1.43
Rnf40Q3U319 Olfr542-ps1-202ENSMUST00000218525 4039 ntTSL 5 BASIC6.13□□□□□ -1.43
Rnf40Q3U319 AC153365.1-201ENSMUST00000219016 2031 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Naip2-201ENSMUST00000067975 4709 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
Rnf40Q3U319 Dennd4c-204ENSMUST00000142837 5870 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Dnah14-209ENSMUST00000208001 13696 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Wfdc18-201ENSMUST00000001009 521 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm13811-201ENSMUST00000117800 256 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm13156-201ENSMUST00000118348 321 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Rpl31-ps12-201ENSMUST00000119957 375 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm7580-201ENSMUST00000132826 497 ntTSL 3 BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm24477-201ENSMUST00000157438 103 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm25914-201ENSMUST00000157618 153 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Rpl30-ps2-201ENSMUST00000160070 291 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm6264-201ENSMUST00000160802 624 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm6214-201ENSMUST00000178845 541 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm38030-201ENSMUST00000192376 475 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Siae-201ENSMUST00000002007 3339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm2762-204ENSMUST00000201815 537 ntTSL 3 BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm44720-201ENSMUST00000206076 260 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm45848-201ENSMUST00000212932 1871 ntTSL 5 BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm17021-202ENSMUST00000214413 2371 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 4930591E09Rik-201ENSMUST00000215643 480 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Gm18189-201ENSMUST00000218153 1951 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 CT025689.2-201ENSMUST00000224979 429 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 AC158750.1-201ENSMUST00000226163 634 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Chst9-201ENSMUST00000053017 1620 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Rpl31-ps4-201ENSMUST00000079114 390 ntBASIC6.12□□□□□ -1.43
Rnf40Q3U319 Fbxo3-202ENSMUST00000102565 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Olfr911-ps1-202ENSMUST00000216496 3576 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Tmc5-204ENSMUST00000121744 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Olfr597-202ENSMUST00000216456 2727 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
Rnf40Q3U319 Olfr902-202ENSMUST00000213105 2113 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm13912-201ENSMUST00000156541 1860 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Vmn2r34-201ENSMUST00000173459 3616 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Ugt2b35-201ENSMUST00000031186 3359 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Skint4-201ENSMUST00000069769 3367 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Olfr1427-202ENSMUST00000215374 3342 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Olfr110-201ENSMUST00000168318 1639 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Zfy1-202ENSMUST00000189888 2864 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Enpp2-203ENSMUST00000171545 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm2366-201ENSMUST00000180753 3982 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 B230217J21Rik-201ENSMUST00000218349 3896 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm23422-201ENSMUST00000102000 107 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Trav16n-201ENSMUST00000103633 353 ntAPPRIS ALT2 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Prdx2-rs3-201ENSMUST00000117259 594 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm15400-201ENSMUST00000118944 601 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm14714-201ENSMUST00000119743 439 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm13493-201ENSMUST00000120318 493 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm14656-201ENSMUST00000120342 502 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm8880-201ENSMUST00000121800 454 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Eif4e1b-203ENSMUST00000126785 841 ntAPPRIS ALT2 TSL 3 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm23279-201ENSMUST00000157912 97 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm24348-201ENSMUST00000158710 130 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm24682-201ENSMUST00000158764 137 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Defa27-202ENSMUST00000168340 371 ntTSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm26779-201ENSMUST00000181101 551 ntTSL 2 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm27295-201ENSMUST00000184264 153 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 76,532 protein–RNA pairs in 81.6 ms