Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Vmn2r-ps43-201ENSMUST00000173798 2473 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm3665-201ENSMUST00000177214 2461 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Vmn2r-ps51-201ENSMUST00000177271 2461 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Ino80d-205ENSMUST00000165066 13529 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm25168-201ENSMUST00000104189 132 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm23226-201ENSMUST00000116927 103 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm12814-201ENSMUST00000117091 846 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm15176-201ENSMUST00000117734 135 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Hmgb1-rs18-201ENSMUST00000117940 627 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm13170-201ENSMUST00000119716 643 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm11325-201ENSMUST00000119967 469 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm5384-201ENSMUST00000120313 463 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm12649-201ENSMUST00000137509 581 ntTSL 3 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm26173-201ENSMUST00000158416 136 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm24498-201ENSMUST00000158445 102 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm8161-201ENSMUST00000168739 481 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Vmn1r-ps14-201ENSMUST00000176859 913 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 4933433F19Rik-201ENSMUST00000180571 1088 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm26652-202ENSMUST00000181672 475 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm27007-201ENSMUST00000183264 279 ntTSL 3 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 1700063O14Rik-201ENSMUST00000187067 492 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm28597-201ENSMUST00000187664 666 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 1700023F02Rik-203ENSMUST00000189619 473 ntTSL 3 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm19224-201ENSMUST00000190477 793 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm38098-201ENSMUST00000194115 241 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm37473-201ENSMUST00000195079 674 ntTSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm17781-201ENSMUST00000195232 649 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Csn1s2a-202ENSMUST00000196585 762 ntAPPRIS ALT2 TSL 3 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm45715-201ENSMUST00000206991 434 ntTSL 3 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm39469-201ENSMUST00000214845 461 ntTSL 2 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm46146-201ENSMUST00000217483 346 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 AC122301.3-201ENSMUST00000217707 716 ntTSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 AC124399.1-201ENSMUST00000218334 590 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 AC144798.1-201ENSMUST00000228120 391 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Olfr911-ps1-201ENSMUST00000074987 940 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Csn1s2a-201ENSMUST00000076379 920 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm25135-201ENSMUST00000082648 143 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm25699-201ENSMUST00000082896 167 ntBASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Spc25-201ENSMUST00000005365 1352 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Chek1-205ENSMUST00000173963 1509 ntTSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 2310003L06Rik-201ENSMUST00000007601 1603 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Olfr172-202ENSMUST00000214139 1778 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Scel-201ENSMUST00000095576 2424 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Zan-204ENSMUST00000164178 16451 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Olfr362-202ENSMUST00000213817 4059 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm26767-201ENSMUST00000180936 4476 ntTSL 5 BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gucy2f-201ENSMUST00000042530 8122 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Ddb1Q3U1J4 Gm45792-201ENSMUST00000207795 4268 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Vwa5a-201ENSMUST00000001544 4157 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr612-202ENSMUST00000214269 2420 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Kcnt2-202ENSMUST00000120709 5790 ntTSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr364-ps1-202ENSMUST00000214905 1914 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Zfp936-201ENSMUST00000072829 1368 ntTSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm26384-201ENSMUST00000102183 110 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm24376-201ENSMUST00000104399 127 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm15268-201ENSMUST00000118845 352 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm12770-201ENSMUST00000121734 462 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm12045-201ENSMUST00000122122 573 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm15461-201ENSMUST00000143488 235 ntTSL 3 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm23084-201ENSMUST00000157850 114 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm22135-201ENSMUST00000158752 108 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm7241-201ENSMUST00000159853 357 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm3111-201ENSMUST00000167426 490 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Vmn1r-ps150-201ENSMUST00000176659 736 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Mir6418-201ENSMUST00000185075 115 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm28489-201ENSMUST00000186655 316 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm28974-201ENSMUST00000187893 231 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm37239-201ENSMUST00000193510 141 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm29950-201ENSMUST00000195273 237 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Igkv13-73-1-201ENSMUST00000196767 200 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm43015-201ENSMUST00000199087 565 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm18482-201ENSMUST00000202405 760 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm43635-201ENSMUST00000202533 352 ntTSL 3 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr747-202ENSMUST00000205373 1132 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr496-ps1-201ENSMUST00000208862 915 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 E330011O21Rik-203ENSMUST00000210555 455 ntTSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm6929-201ENSMUST00000210930 468 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 AC156790.3-201ENSMUST00000226200 254 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Vmn1r75-201ENSMUST00000057229 918 ntAPPRIS P2 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr748-201ENSMUST00000073561 924 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Klra6-201ENSMUST00000074056 1116 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr1116-201ENSMUST00000090717 924 ntAPPRIS P2 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Ccnb3-202ENSMUST00000115752 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Dmd-201ENSMUST00000113991 4438 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr612-203ENSMUST00000215663 2473 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm20139-202ENSMUST00000216041 3888 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Gm44708-201ENSMUST00000205580 2237 ntBASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Mmp12-201ENSMUST00000005950 3607 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Stard9-207ENSMUST00000180041 15102 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Zfp759-201ENSMUST00000052716 3482 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Ddb1Q3U1J4 Olfr620-201ENSMUST00000052152 3157 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Olfr733-203ENSMUST00000214756 3640 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Nlrp4f-201ENSMUST00000037372 3527 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Slco1b2-201ENSMUST00000042812 3307 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Polk-205ENSMUST00000221899 2319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Olfr769-202ENSMUST00000215453 4143 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Vmn1r184-206ENSMUST00000228145 5888 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm4736-201ENSMUST00000100870 380 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm23133-201ENSMUST00000104255 135 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm14399-203ENSMUST00000109059 703 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
Retrieved 100 of 76,532 protein–RNA pairs in 92.7 ms