Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm28162-201ENSMUST00000190545 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29030-201ENSMUST00000190848 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28742-201ENSMUST00000191001 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28899-201ENSMUST00000191161 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29567-201ENSMUST00000191188 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28222-201ENSMUST00000191210 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28776-201ENSMUST00000191282 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29306-201ENSMUST00000191366 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29618-201ENSMUST00000191423 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28136-210ENSMUST00000191432 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29251-201ENSMUST00000191480 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28658-201ENSMUST00000191532 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Sprr2h-202ENSMUST00000191886 297 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm32180-201ENSMUST00000192415 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm30598-201ENSMUST00000192620 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm37627-201ENSMUST00000194585 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm37358-201ENSMUST00000195492 479 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm34274-201ENSMUST00000195825 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Igkv4-73-201ENSMUST00000199760 358 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm34091-201ENSMUST00000200875 604 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 1700028E10Rik-206ENSMUST00000202216 557 ntTSL 3 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Olfr542-ps1-201ENSMUST00000211706 831 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm31711-201ENSMUST00000220687 196 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Bcl2l15-201ENSMUST00000062945 833 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm23095-201ENSMUST00000083446 107 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm22581-201ENSMUST00000083735 136 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Ap5m1-208ENSMUST00000228238 3514 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm45131-201ENSMUST00000208051 2582 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Olfr1289-201ENSMUST00000120021 1643 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 AC102847.2-201ENSMUST00000227799 2906 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Cxcr1-202ENSMUST00000190313 1451 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Ppef1-201ENSMUST00000071204 2483 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Dnah3-204ENSMUST00000209154 12265 ntAPPRIS P5 TSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Kdm4c-202ENSMUST00000077851 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Pls3-202ENSMUST00000114057 3160 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Zpld1-202ENSMUST00000143914 2697 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 1700008H02Rik-201ENSMUST00000201220 1684 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Tecrl-201ENSMUST00000053543 2350 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm13119-201ENSMUST00000094526 2094 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 AC153729.4-201ENSMUST00000217582 3826 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 A830019L24Rik-202ENSMUST00000198056 3165 ntTSL 3 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Olfr447-202ENSMUST00000216408 3185 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Creb5-203ENSMUST00000203528 7917 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Igkv17-121-201ENSMUST00000103315 350 ntAPPRIS ALT2 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Igkv9-120-201ENSMUST00000103316 353 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm26422-201ENSMUST00000104276 132 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm11430-201ENSMUST00000121317 217 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm12107-201ENSMUST00000132857 889 ntTSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm6969-201ENSMUST00000140065 342 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm24441-201ENSMUST00000157235 281 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm22257-201ENSMUST00000158687 301 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm16226-201ENSMUST00000159950 760 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm20545-201ENSMUST00000174739 210 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm36954-201ENSMUST00000195362 363 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm44342-201ENSMUST00000196874 129 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm44383-201ENSMUST00000198940 129 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 1700014F14Rik-201ENSMUST00000199566 197 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 AC099934.1-201ENSMUST00000200493 79 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm43126-201ENSMUST00000201546 429 ntTSL 3 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm45403-201ENSMUST00000209453 276 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 AC119894.1-201ENSMUST00000220399 350 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 AC118639.1-201ENSMUST00000227204 338 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 AC100733.1-201ENSMUST00000228494 407 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm5045-201ENSMUST00000027054 810 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm10037-201ENSMUST00000060609 315 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm6436-201ENSMUST00000077163 451 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm10160-201ENSMUST00000085094 201 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 CT009696.4-201ENSMUST00000213487 1801 ntTSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Ktn1-224ENSMUST00000191018 4033 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Vmn2r102-201ENSMUST00000171741 2574 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Olfr1195-202ENSMUST00000213545 2585 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Pdc-202ENSMUST00000185698 3335 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Spef2-206ENSMUST00000208854 7038 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm8979-201ENSMUST00000183386 7296 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 AC105407.2-201ENSMUST00000223707 3911 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Nxf7-201ENSMUST00000033784 1863 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Cd44-203ENSMUST00000099673 2848 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Acsl4-204ENSMUST00000112907 5137 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Mtx3-201ENSMUST00000076169 6275 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm2004-201ENSMUST00000109049 1749 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm14419-202ENSMUST00000126358 1749 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
Rnf40Q3U319 AC121942.1-201ENSMUST00000224459 2891 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Gm5362-201ENSMUST00000211968 3085 ntBASIC6.19□□□□□ -1.42
Rnf40Q3U319 Trim30d-201ENSMUST00000033211 1904 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
Rnf40Q3U319 Olfr1265-202ENSMUST00000214855 5701 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
Rnf40Q3U319 Olfr947-ps1-202ENSMUST00000214936 2168 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm42681-201ENSMUST00000197999 1611 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Vmn1r171-202ENSMUST00000226128 3063 ntAPPRIS ALT2 BASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm19666-201ENSMUST00000198176 1893 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 n-R5s52-201ENSMUST00000104614 113 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Snord88a-201ENSMUST00000116723 90 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm23990-201ENSMUST00000117031 117 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm14904-201ENSMUST00000117067 335 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm14890-201ENSMUST00000117660 676 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm15162-201ENSMUST00000119325 283 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Hmgb1-ps1-201ENSMUST00000119350 634 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm11504-201ENSMUST00000120211 173 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm6062-201ENSMUST00000120462 631 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm6305-201ENSMUST00000121027 1012 ntBASIC6.18□□□□□ -1.42
Rnf40Q3U319 Gm12451-201ENSMUST00000121636 633 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 92.7 ms