Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm24835-201ENSMUST00000116777 111 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm13087-201ENSMUST00000118298 256 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm11606-201ENSMUST00000120706 617 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm13932-201ENSMUST00000120873 610 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm13865-201ENSMUST00000120957 865 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm14506-201ENSMUST00000121165 536 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm25923-201ENSMUST00000158312 138 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 1700016C15Rik-201ENSMUST00000016106 768 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Trbv10-201ENSMUST00000168322 289 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Vmn2r-ps75-201ENSMUST00000173251 213 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Anks1b-207ENSMUST00000182045 544 ntTSL 3 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Mir6414-201ENSMUST00000183685 82 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Mir6907-201ENSMUST00000183764 71 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Mir8118-201ENSMUST00000183962 129 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm27905-201ENSMUST00000184005 207 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Mir3620-201ENSMUST00000184710 61 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 1700054K19Rik-201ENSMUST00000186102 452 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm18448-201ENSMUST00000186286 599 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm5368-201ENSMUST00000189012 589 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm28181-201ENSMUST00000191460 687 ntTSL 3 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm19057-201ENSMUST00000194329 1197 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm42566-201ENSMUST00000197120 643 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm43505-201ENSMUST00000200579 139 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm43368-201ENSMUST00000200638 409 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm19457-201ENSMUST00000200995 448 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm8774-201ENSMUST00000203621 692 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm5001-201ENSMUST00000204361 331 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm45830-201ENSMUST00000212945 344 ntTSL 5 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm39302-201ENSMUST00000215184 636 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 AC162376.1-201ENSMUST00000220120 435 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 AC116589.1-201ENSMUST00000220634 327 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm18442-201ENSMUST00000220925 639 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 AC130536.1-201ENSMUST00000224425 271 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 AC117202.1-201ENSMUST00000227007 445 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 CT573086.3-201ENSMUST00000228762 594 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Lrrc69-201ENSMUST00000023917 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Fabp9-201ENSMUST00000029038 583 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Muc16-201ENSMUST00000034653 1035 ntTSL 2 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Olfr1176-201ENSMUST00000057439 949 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Olfr186-201ENSMUST00000062380 1005 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Olfr699-201ENSMUST00000065024 951 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Olfr295-201ENSMUST00000078447 930 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm24031-201ENSMUST00000083930 131 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Mir465c-1-201ENSMUST00000093560 81 ntBASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Tgif1-202ENSMUST00000118283 1388 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Gm14412-201ENSMUST00000108959 1581 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Trpc5os-201ENSMUST00000155206 3585 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Ddx3y-201ENSMUST00000091190 4600 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Plcb4-201ENSMUST00000035646 3635 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
Col28a1Q2UY11 Olfr406-203ENSMUST00000217016 2651 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm37900-201ENSMUST00000195510 3805 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Dnah12-201ENSMUST00000022433 12009 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Olfr969-202ENSMUST00000213266 1597 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 B830012L14Rik-201ENSMUST00000182785 4505 ntTSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm23322-201ENSMUST00000104464 167 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Olfr260-ps1-201ENSMUST00000117279 822 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm12261-201ENSMUST00000117499 645 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm11869-201ENSMUST00000118701 329 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm7363-201ENSMUST00000119883 399 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm11904-201ENSMUST00000120562 248 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm14037-201ENSMUST00000120576 313 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 1700073E17Rik-202ENSMUST00000146858 382 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm22378-201ENSMUST00000157481 111 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm23591-201ENSMUST00000157663 286 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm24905-201ENSMUST00000158129 104 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm26271-201ENSMUST00000158349 104 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm22841-201ENSMUST00000158443 62 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm17060-201ENSMUST00000172394 824 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm18604-201ENSMUST00000172535 558 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm26365-201ENSMUST00000179177 94 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Hmgb1-ps8-201ENSMUST00000181542 626 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm9892-201ENSMUST00000182415 992 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Mir6341-201ENSMUST00000183490 121 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Ranbp2-ps3-201ENSMUST00000183549 388 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm28643-201ENSMUST00000188811 356 ntTSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm28550-201ENSMUST00000189125 618 ntTSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm28788-201ENSMUST00000189717 375 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm29558-201ENSMUST00000190134 375 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm28460-202ENSMUST00000190590 618 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm29130-201ENSMUST00000191015 618 ntTSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm37193-201ENSMUST00000193087 513 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm18900-201ENSMUST00000193218 584 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm37650-201ENSMUST00000193570 248 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm38093-201ENSMUST00000195210 710 ntTSL 3 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm36953-201ENSMUST00000195295 268 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm44474-201ENSMUST00000196525 127 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm43020-201ENSMUST00000197178 372 ntTSL 3 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Traj59-202ENSMUST00000197589 62 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Olfr1401-ps1-201ENSMUST00000202296 211 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm44990-201ENSMUST00000203922 217 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm44278-201ENSMUST00000204082 312 ntTSL 2 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm43892-201ENSMUST00000204373 265 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm45007-201ENSMUST00000206237 366 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm36368-201ENSMUST00000212026 461 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm21112-201ENSMUST00000212224 578 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm7760-201ENSMUST00000212265 578 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Gm7807-201ENSMUST00000212475 578 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 AC109212.1-201ENSMUST00000215561 427 ntBASIC4.2□□□□□ -1.74
Col28a1Q2UY11 AC122508.1-201ENSMUST00000218365 233 ntTSL 5 BASIC4.2□□□□□ -1.74
Col28a1Q2UY11 Acrv1-201ENSMUST00000034620 1101 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
Retrieved 100 of 76,532 protein–RNA pairs in 93.6 ms