Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Serpina7-201ENSMUST00000033626 2330 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Ccdc88bQ4QRL3 Fsd1l-203ENSMUST00000132151 7467 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
Ccdc88bQ4QRL3 4933400A11Rik-203ENSMUST00000112102 1101 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm17421-201ENSMUST00000167845 674 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Mir5118-201ENSMUST00000175551 67 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Vmn1r-ps20-201ENSMUST00000176809 915 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm7870-201ENSMUST00000184467 616 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Zfp-ps-201ENSMUST00000185025 478 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 AC174457.1-201ENSMUST00000215932 226 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm28710-202ENSMUST00000211738 2987 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Lrrd1-201ENSMUST00000044039 2951 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1143-202ENSMUST00000099852 2028 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1251-201ENSMUST00000214304 3133 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr652-202ENSMUST00000215410 4672 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1085-203ENSMUST00000214566 5129 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm18432-201ENSMUST00000195568 1451 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 4932414N04Rik-201ENSMUST00000055930 3519 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Vmn1r79-203ENSMUST00000227530 5581 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm2026-201ENSMUST00000109007 1621 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Dnah6-203ENSMUST00000114040 12513 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm12568-201ENSMUST00000117362 624 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm12261-201ENSMUST00000117499 645 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Hmgb1-ps2-201ENSMUST00000117548 636 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm13379-201ENSMUST00000118053 621 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Hmgb1-ps4-201ENSMUST00000118281 635 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Hmgb1-ps3-201ENSMUST00000118415 636 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr360-201ENSMUST00000120704 954 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm10075-201ENSMUST00000162030 545 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Hmgb1-ps9-201ENSMUST00000179479 645 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm26866-201ENSMUST00000180414 802 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm44016-201ENSMUST00000203463 164 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Gm8319-201ENSMUST00000205708 641 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1311-201ENSMUST00000208536 943 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 1700037F03Rik-201ENSMUST00000223032 365 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 AC173482.3-201ENSMUST00000225492 1212 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 AC164100.1-201ENSMUST00000227214 508 ntBASIC5.32□□□□□ -1.56
Ccdc88bQ4QRL3 Nfia-205ENSMUST00000107062 9239 ntTSL 5 BASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gria2-201ENSMUST00000075316 10371 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr389-201ENSMUST00000122224 3057 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm44078-201ENSMUST00000204652 2646 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm26423-201ENSMUST00000104277 128 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1050-ps1-201ENSMUST00000119802 947 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Ap3m1-ps-201ENSMUST00000177652 1258 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm32222-201ENSMUST00000203296 298 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm45427-201ENSMUST00000209572 1253 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm8423-201ENSMUST00000211387 607 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm19181-201ENSMUST00000218891 940 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm24474-201ENSMUST00000220504 469 ntTSL 2 BASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr824-201ENSMUST00000074161 948 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm23377-201ENSMUST00000082943 126 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm10234-201ENSMUST00000089304 60 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Gm42909-201ENSMUST00000196982 3619 ntBASIC5.31□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1173-201ENSMUST00000099830 2268 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Mgat4c-202ENSMUST00000120748 2603 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Vmn1r82-201ENSMUST00000072801 4784 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 AC124346.2-201ENSMUST00000217986 5083 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr391-ps-201ENSMUST00000214485 2080 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Klra11-ps-201ENSMUST00000122033 810 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Etaa1os-202ENSMUST00000148496 388 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Gm24358-201ENSMUST00000158424 288 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Gm17187-201ENSMUST00000164622 410 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Gm5552-201ENSMUST00000197149 515 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Gm43521-201ENSMUST00000197838 255 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Gm43107-201ENSMUST00000198729 255 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 1700095K22Rik-201ENSMUST00000206808 282 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Gm7540-201ENSMUST00000219764 926 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 AC166358.4-201ENSMUST00000223030 105 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr229-201ENSMUST00000076802 924 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 AC122408.2-201ENSMUST00000217901 1391 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 CT009504.1-201ENSMUST00000218252 3330 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Gm37645-201ENSMUST00000194285 3556 ntBASIC5.3□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr800-202ENSMUST00000217094 3831 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Hdx-202ENSMUST00000113422 9534 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Gm11260-201ENSMUST00000121163 942 ntBASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Gm7855-201ENSMUST00000137737 687 ntBASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Gm29359-201ENSMUST00000191007 495 ntTSL 5 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Gm28563-201ENSMUST00000201179 211 ntTSL 3 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Gm43596-201ENSMUST00000202818 884 ntBASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Cyp2b26-ps-201ENSMUST00000206238 1090 ntBASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Gm19126-201ENSMUST00000207896 509 ntBASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Tex36-201ENSMUST00000033275 958 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Vmn1r34-201ENSMUST00000074381 930 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 4930524N10Rik-201ENSMUST00000082357 919 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Prl7d1-203ENSMUST00000224026 3657 ntAPPRIS P2 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Neat1-201ENSMUST00000173672 20771 ntBASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Gm12374-201ENSMUST00000147108 3299 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 F8-201ENSMUST00000033539 9784 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr597-202ENSMUST00000216456 2727 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1438-ps1-201ENSMUST00000208398 4761 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Ktn1-201ENSMUST00000022391 4484 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Zfp709-201ENSMUST00000034259 2181 ntTSL 5 BASIC5.29□□□□□ -1.56
Ccdc88bQ4QRL3 Olfr1269-202ENSMUST00000214404 3535 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 A230081H15Rik-201ENSMUST00000218326 2929 ntBASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 Trav8d-2-201ENSMUST00000103605 334 ntAPPRIS ALT2 BASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 Gm12858-201ENSMUST00000121913 208 ntBASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 Gm15522-201ENSMUST00000134467 785 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 Gm18867-201ENSMUST00000198022 1179 ntBASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 Gm45733-201ENSMUST00000212988 437 ntBASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 Gm32443-202ENSMUST00000220011 773 ntTSL 5 BASIC5.28□□□□□ -1.56
Ccdc88bQ4QRL3 Gm17820-201ENSMUST00000220213 1068 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 76,532 protein–RNA pairs in 81.4 ms