Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Cpsf3Q9QXK7 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Cpsf3Q9QXK7 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Gm7638-201ENSMUST00000121348 967 ntBASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cpsf3Q9QXK7 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Gm13559-201ENSMUST00000120476 863 ntBASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cpsf3Q9QXK7 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Mir7071-201ENSMUST00000184847 69 ntBASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Cpsf3Q9QXK7 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cpsf3Q9QXK7 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Gm27463-201ENSMUST00000183569 57 ntBASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Gm37025-201ENSMUST00000195159 829 ntBASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.66■□□□□ 0.58
Cpsf3Q9QXK7 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cpsf3Q9QXK7 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms