Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Ube3bQ9ES34 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Ube3bQ9ES34 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.62■□□□□ 0.89
Ube3bQ9ES34 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.61■□□□□ 0.89
Ube3bQ9ES34 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 AC134329.2-201ENSMUST00000217897 428 ntBASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ube3bQ9ES34 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ube3bQ9ES34 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ube3bQ9ES34 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Gm6659-201ENSMUST00000174752 547 ntBASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ube3bQ9ES34 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms