Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim54Q9ERP3 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim54Q9ERP3 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Gm13474-201ENSMUST00000122466 815 ntBASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Gm33142-201ENSMUST00000193913 867 ntBASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim54Q9ERP3 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Trim54Q9ERP3 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim54Q9ERP3 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim54Q9ERP3 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.77■□□□□ 0.59
Trim54Q9ERP3 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim54Q9ERP3 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trim54Q9ERP3 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Gm37025-201ENSMUST00000195159 829 ntBASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Gm9731-201ENSMUST00000209480 747 ntBASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trim54Q9ERP3 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim54Q9ERP3 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.74■□□□□ 0.59
Trim54Q9ERP3 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim54Q9ERP3 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms