Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdc40Q9DC48 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Cdc40Q9DC48 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdc40Q9DC48 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdc40Q9DC48 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cdc40Q9DC48 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cdc40Q9DC48 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Gm18025-201ENSMUST00000221733 862 ntBASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cdc40Q9DC48 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 AC124581.1-201ENSMUST00000225416 1399 ntBASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Gm37811-201ENSMUST00000192416 2601 ntBASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cdc40Q9DC48 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Gm10418-201ENSMUST00000100943 576 ntBASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Gm12382-201ENSMUST00000122005 922 ntBASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Cdc40Q9DC48 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 AC175538.1-201ENSMUST00000225343 1269 ntBASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Cdc40Q9DC48 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Cdc40Q9DC48 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Cdc40Q9DC48 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC16.08■□□□□ 0.17
Cdc40Q9DC48 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Cdc40Q9DC48 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Cdc40Q9DC48 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Gm8969-201ENSMUST00000199694 526 ntBASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms