Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cstf1Q99LC2 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Cstf1Q99LC2 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.29■□□□□ 0.36
Cstf1Q99LC2 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Gm26039-201ENSMUST00000158152 144 ntBASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Gm28659-201ENSMUST00000188013 759 ntBASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Cstf1Q99LC2 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 AC164629.2-201ENSMUST00000217916 270 ntBASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cstf1Q99LC2 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cstf1Q99LC2 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cstf1Q99LC2 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Cstf1Q99LC2 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cstf1Q99LC2 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Cstf1Q99LC2 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Cstf1Q99LC2 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cstf1Q99LC2 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Cstf1Q99LC2 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms